5430400D12Rik Gene Detail

Summary

• Symbol
  5430400D12Rik
• Name
  RIKEN cDNA 5430400D12 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918589
  NCBI Gene: 71339
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:79570378-79576025 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 45.27 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  307 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918589	lncRNA gene	Chr7:79570378-79598163 (+)
129S1/SvImJ	ENSMUSG00200034801	lncRNA gene	Chr7:66386679-66388477 (+)
A/J	ENSMUSG00195014596	lncRNA gene	Chr7:70800322-70802120 (+)
AKR/J	ENSMUSG00220040864	lncRNA gene	Chr7:64342352-64344150 (+)
BALB/cJ	ENSMUSG00180013688	lncRNA gene	Chr7:67525455-67527253 (+)
C3H/HeJ	ENSMUSG00175021716	lncRNA gene	Chr7:68298753-68300551 (+)
C57BL/6NJ	ENSMUSG00215035247	lncRNA gene	Chr7:67396218-67398016 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004316	bidirectional promoter lncRNA gene	Chr7:82474825-82476589 (+)
CAST/EiJ	ENSTCUG00005046199	lncRNA gene	Chr7:70846266-70848065 (+)
CBA/J	ENSMUSG00210024108	lncRNA gene	Chr7:68150035-68151833 (+)
DBA/2J	ENSMUSG00185048745	lncRNA gene	Chr7:72472759-72474557 (+)
FVB/NJ	ENSMUSG00205027426	lncRNA gene	Chr7:68037695-68039493 (+)
JF1/MsJ	ENSUMUG00000031686	lncRNA gene	Chr7:77130402-77132203 (+)
LP/J	ENSMUSG00230016214	lncRNA gene	Chr7:78562343-78564141 (+)
NOD/ShiLtJ	ENSMUSG00190019568	lncRNA gene	Chr7:68290036-68291834 (+)
NZO/HlLtJ	ENSMUSG00225042391	lncRNA gene	Chr7:76802344-76804142 (+)
PWK/PhJ	ENSLUMG00010017871	lncRNA gene	Chr7:66723235-66725036 (+)
SPRET/EiJ	ENSMSPG00010026195	lncRNA gene	Chr7:67132628-67134429 (+)
WSB/EiJ	ENSIUOG00005023591	lncRNA gene	Chr7:68636776-68638574 (+)

Homology

• Gene Tree
  5430400D12Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  7
• Chemically induced (other)
  1
• Gene trapped
  4
• Radiation induced
  2
• Genomic Mutations
  3 involving 5430400D12Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  1

• Ensembl
  ENSMUSG00000097699 (Evidence)
• NCBI Gene
  71339

Representative Sequences			Length	Strain/Species
genomic	71339	NCBI Gene Model | MGI Sequence Detail	5648	C57BL/6J
transcript	AK017243	GenBank | ENA | DDBJ | MGI Sequence Detail	1659	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 22

  Phenotypes 13
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9