About   Help   FAQ
5430402P08Rik Gene Detail
Summary
  • Symbol
    5430402P08Rik
  • Name
    RIKEN cDNA 5430402P08 gene
  • Synonyms
    lncMREF
Location &
Maps
more
  • Sequence Map
    Chr7:110965505-110994815 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1048 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918577
 lncRNA gene Chr7:110965505-110994815 (+)
129S1/SvImJ ENSMUSG00200035070
 lncRNA gene Chr7:97509108-97538418 (+)
A/J ENSMUSG00195041302
 lncRNA gene Chr7:102012611-102041923 (+)
AKR/J ENSMUSG00220039736
 lncRNA gene Chr7:95415587-95444902 (+)
BALB/cJ ENSMUSG00180046580
 lncRNA gene Chr7:98680706-98710020 (+)
C3H/HeJ ENSMUSG00175052028
 lncRNA gene Chr7:99316610-99345924 (+)
C57BL/6NJ ENSMUSG00215051757
 lncRNA gene Chr7:98621443-98650755 (+)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005044789
 lncRNA gene Chr7:102000136-102030581 (+)
CBA/J ENSMUSG00210047442
 lncRNA gene Chr7:99143630-99172944 (+)
DBA/2J ENSMUSG00185022086
 lncRNA gene Chr7:103493756-103523068 (+)
FVB/NJ ENSMUSG00205048640
 lncRNA gene Chr7:99106552-99135864 (+)
JF1/MsJ ENSUMUG00000052467
 lncRNA gene Chr7:108513458-108544688 (+)
LP/J ENSMUSG00230048976
 lncRNA gene Chr7:109594843-109624157 (+)
NOD/ShiLtJ ENSMUSG00190047450
 lncRNA gene Chr7:99305182-99334490 (+)
NZO/HlLtJ no annotation
PWK/PhJ ENSLUMG00010043842
 lncRNA gene Chr7:97654066-97684512 (+)
SPRET/EiJ ENSMSPG00010042037
 lncRNA gene Chr7:98816027-98852678 (+)
WSB/EiJ ENSIUOG00005050364
 lncRNA gene Chr7:99958206-99987510 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    1
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    20
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000109808 Ensembl Gene Model | MGI Sequence Detail 29311 C57BL/6J ±  kb
transcript ENSMUST00000211799 Ensembl | MGI Sequence Detail 1143 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 9
    Developmental Gene Expression 1
    Gene Ontology 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:330270 Lv W, et al., Long noncoding RNA lncMREF promotes myogenic differentiation and muscle regeneration by interacting with the Smarca5/p300 complex. Nucleic Acids Res. 2022 Oct 14;50(18):10733-10755
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory