Wbscr25 Gene Detail

Summary

• Symbol
  Wbscr25
• Name
  Williams Beuren syndrome chromosome region 25 (human)
• Synonyms
  4933433J03Rik, 4933439O14Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1918554
  NCBI Gene: 71304
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr5:135016287-135030204 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 74.93 cM
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  419 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918554	antisense lncRNA gene	Chr5:135014903-135030204 (-)
129S1/SvImJ	ENSMUSG00200048456	lncRNA gene	Chr5:128798660-128812589 (-)
129S1/SvImJ	ENSMUSG00200046816	protein coding gene	Chr5:128797404-128812966 (-)
A/J	ENSMUSG00195048892	protein coding gene	Chr5:128303857-128319417 (-)
A/J	ENSMUSG00195050971	lncRNA gene	Chr5:128305113-128319040 (-)
AKR/J	ENSMUSG00220051220	lncRNA gene	Chr5:127792519-127806443 (-)
AKR/J	ENSMUSG00220049031	protein coding gene	Chr5:127791263-127806820 (-)
BALB/cJ	ENSMUSG00180045266	lncRNA gene	Chr5:128409862-128423800 (-)
BALB/cJ	ENSMUSG00180036836	protein coding gene	Chr5:128408606-128424177 (-)
C3H/HeJ	ENSMUSG00175040996	lncRNA gene	Chr5:130336004-130349926 (-)
C3H/HeJ	ENSMUSG00175035064	protein coding gene	Chr5:130334748-130350303 (-)
C57BL/6NJ	ENSMUSG00215049132	lncRNA gene	Chr5:128454954-128468875 (-)
C57BL/6NJ	ENSMUSG00215045241	protein coding gene	Chr5:128453698-128469252 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003787	antisense lncRNA gene	Chr5:127809508-127824411 (-)
CAST/EiJ	ENSTCUG00005010702	lncRNA gene	Chr5:127689791-127703832 (-)
CBA/J	ENSMUSG00210008375	lncRNA gene	Chr5:129153706-129167641 (-)
CBA/J	ENSMUSG00210007416	protein coding gene	Chr5:129152450-129168020 (-)
DBA/2J	ENSMUSG00185055233	lncRNA gene	Chr5:132168901-132182827 (-)
DBA/2J	ENSMUSG00185052465	protein coding gene	Chr5:132167645-132183204 (-)
FVB/NJ	ENSMUSG00205050086	lncRNA gene	Chr5:128056820-128070738 (-)
FVB/NJ	ENSMUSG00205042358	protein coding gene	Chr5:128055564-128071113 (-)
JF1/MsJ	ENSUMUG00000054978	lncRNA gene	Chr5:135068364-135082499 (-)
LP/J	ENSMUSG00230045889	protein coding gene	Chr5:136283236-136298797 (-)
LP/J	ENSMUSG00230049564	lncRNA gene	Chr5:136284492-136298420 (-)
NOD/ShiLtJ	ENSMUSG00190046773	lncRNA gene	Chr5:128110358-128124287 (-)
NOD/ShiLtJ	ENSMUSG00190029641	protein coding gene	Chr5:128109102-128124664 (-)
NZO/HlLtJ	ENSMUSG00225022737	protein coding gene	Chr5:143962969-143978528 (-)
NZO/HlLtJ	ENSMUSG00225023785	lncRNA gene	Chr5:143964225-143978151 (-)
PWK/PhJ	ENSLUMG00010018943	lncRNA gene	Chr5:126915503-126929653 (-)
SPRET/EiJ	ENSMSPG00010034113	lncRNA gene	Chr5:130323055-130337102 (-)
WSB/EiJ	ENSIUOG00005037247	lncRNA gene	Chr5:130757115-130771052 (-)

Homology

• Gene Tree
  Wbscr25
  

Human Diseases

• References
  2 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  16 phenotype references
  

• All Mutations and Alleles
  15
• Endonuclease-mediated
  1
• Gene trapped
  12
• Targeted
  2
• Genomic Mutations
  2 involving Wbscr25
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  44
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000054909 (Evidence)
• NCBI Gene
  71304

Representative Sequences			Length	Strain/Species
genomic	71304	NCBI Gene Model | MGI Sequence Detail	13918	C57BL/6J
transcript	NR_026907	RefSeq | MGI Sequence Detail	2075	Not Specified
polypeptide	Q810H9	UniProt | EBI | MGI Sequence Detail	270	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 4

  Genomic 1

  cDNA 3

  
  

  Microarray probesets 4

Other
Accession IDs

MGI:1918533

References

• Summaries
  All 31

  Diseases 2

  Phenotypes 16
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:373971 Gutzen R, et al., A modular and adaptable analysis pipeline to compare slow cerebral rhythms across heterogeneous datasets. Cell Rep Methods. 2024 Jan 22;4(1):100681

TSS for Wbscr25:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr53714	Chr5:135030219-135030230 (-)	-21 bp
Tssr53713	Chr5:135030142-135030215 (-)	25 bp
Tssr53712	Chr5:135030134-135030139 (-)	67 bp
Tssr53711	Chr5:135029787-135029797 (-)	412 bp
Tssr53710	Chr5:135029708-135029715 (-)	492 bp
Tssr53709	Chr5:135029611-135029616 (-)	590 bp