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Crnde Gene Detail
Summary
  • Symbol
    Crnde
  • Name
    colorectal neoplasia differentially expressed, non-protein coding
  • Synonyms
    4933436C20Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1918546
    NCBI Gene: 71296
  • Alliance
    genome feature page
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:93052661-93082739 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 44.89 cM, cytoband C5
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    863 from dbSNP Build 142
  • Strain Annotations
    20
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918546
 lncRNA gene Chr8:93038763-93084336 (-)
129S1/SvImJ ENSMUSG00200017823
 lncRNA gene Chr8:87410594-87442192 (-)
A/J ENSMUSG00195026229
 protein coding gene Chr8:87781719-87812014 (-)
A/J ENSMUSG00195028187
 lncRNA gene Chr8:87781851-87813444 (-)
AKR/J ENSMUSG00220040337
 lncRNA gene Chr8:87781620-87813229 (-)
BALB/cJ ENSMUSG00180025239
 lncRNA gene Chr8:87613983-87645543 (-)
C3H/HeJ ENSMUSG00175024284
 protein coding gene Chr8:87720010-87750301 (-)
C3H/HeJ ENSMUSG00175028439
 lncRNA gene Chr8:87720144-87751731 (-)
C57BL/6NJ ENSMUSG00215034107
 lncRNA gene Chr8:87322362-87353954 (-)
C57BL/6NJ ENSMUSG00215022088
 protein coding gene Chr8:87322228-87352524 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0006706
 lincRNA gene Chr8:83858058-83885929 (-)
CAST/EiJ ENSTCUG00005017536
 lncRNA gene Chr8:87189345-87221071 (-)
CBA/J ENSMUSG00210037603
 lncRNA gene Chr8:87665826-87697353 (-)
DBA/2J ENSMUSG00185024387
 lncRNA gene Chr8:93774551-93806076 (-)
FVB/NJ ENSMUSG00205018124
 lncRNA gene Chr8:86743528-86775087 (-)
JF1/MsJ ENSUMUG00000048726
 lncRNA gene Chr8:96129635-96161234 (-)
LP/J no annotation
NOD/ShiLtJ ENSMUSG00190017102
 lncRNA gene Chr8:87771079-87802616 (-)
NZO/HlLtJ no annotation
PWK/PhJ ENSLUMG00010041561
 lncRNA gene Chr8:87441508-87473112 (-)
SPRET/EiJ ENSMSPG00010031088
 lncRNA gene Chr8:89431483-89463370 (-)
WSB/EiJ ENSIUOG00005021316
 lncRNA gene Chr8:88500714-88532118 (-)



Homology
more
  • Human Ortholog
    CRNDE, colorectal neoplasia differentially expressed
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CRNDE, colorectal neoplasia differentially expressed
  • Synonyms
    CRNDEP, LINC00180, lincIRX5, NCRNA00180, PNAS-108
  • Links
    NCBI Gene ID: 643911

  • Chr Location
    16q12.2; chr16:54845189-54929189 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    4 phenotype references
Mice homozygous for a null allele are viable.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    605
  • Tissues
    8
  • cDNA Data
    9
  • Literature Summary
    3
Sequences &
Gene Models
less
  • All Sequences
    197
  • RefSeq
    2
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 71296 NCBI Gene Model | MGI Sequence Detail 30079 C57BL/6J ±  kb
transcript NR_033641 RefSeq | MGI Sequence Detail 1234 C57BL/6  
polypeptide Q9D3T5 UniProt | EBI | MGI Sequence Detail 106 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 2
References
more
  • Summaries
    All 21
    Developmental Gene Expression 3
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:344618 Yuan Y, et al., lncRNA CRNDE Affects Th17/IL-17A and Inhibits Epithelial-Mesenchymal Transition in Lung Epithelial Cells Reducing Asthma Signs. Oxid Med Cell Longev. 2023;2023:2092184
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory