4933439J24Rik Gene Detail

Summary

• Symbol
  4933439J24Rik
• Name
  RIKEN cDNA 4933439J24 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918536
  NCBI Gene: 71286
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:134944160-134949494 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  214 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918536	lncRNA gene	Chr5:134944160-134949494 (+)
129S1/SvImJ	ENSMUSG00200048057	lncRNA gene	Chr5:128730986-128731838 (+)
A/J	ENSMUSG00195051120	lncRNA gene	Chr5:128237438-128238290 (+)
AKR/J	ENSMUSG00220051150	lncRNA gene	Chr5:127724824-127725676 (+)
BALB/cJ	ENSMUSG00180045067	lncRNA gene	Chr5:128342200-128343052 (+)
C3H/HeJ	ENSMUSG00175040221	lncRNA gene	Chr5:130268355-130269207 (+)
C57BL/6NJ	ENSMUSG00215049523	lncRNA gene	Chr5:128387295-128388147 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006220	lincRNA gene	Chr5:127736599-127737456 (+)
CAST/EiJ	ENSTCUG00005010919	lncRNA gene	Chr5:127622465-127623324 (+)
CBA/J	ENSMUSG00210008668	lncRNA gene	Chr5:129086042-129086894 (+)
DBA/2J	ENSMUSG00185054530	lncRNA gene	Chr5:132101232-132102084 (+)
FVB/NJ	ENSMUSG00205049932	lncRNA gene	Chr5:127989158-127990010 (+)
JF1/MsJ	ENSUMUG00000055070	lncRNA gene	Chr5:135000642-135001501 (+)
LP/J	ENSMUSG00230049485	lncRNA gene	Chr5:136216839-136217691 (+)
NOD/ShiLtJ	ENSMUSG00190047127	lncRNA gene	Chr5:128042693-128043545 (+)
NZO/HlLtJ	ENSMUSG00225023759	lncRNA gene	Chr5:143896569-143897421 (+)
PWK/PhJ	ENSLUMG00010018986	lncRNA gene	Chr5:126848164-126849023 (+)
SPRET/EiJ	ENSMSPG00010031928	lncRNA gene	Chr5:130257035-130257894 (+)
WSB/EiJ	ENSIUOG00005036304	lncRNA gene	Chr5:130689492-130690344 (+)

Homology

• Gene Tree
  4933439J24Rik
  

Human Diseases

• References
  2 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  12 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Genomic Mutations
  2 involving 4933439J24Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000107322 (Evidence)
• NCBI Gene
  71286

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107322	Ensembl Gene Model | MGI Sequence Detail	5335	C57BL/6J
transcript	ENSMUST00000200866	Ensembl | MGI Sequence Detail	853	Not Applicable

Molecular
Reagents

• All nucleic 2

  Genomic 1

  cDNA 1

References

• Summaries
  All 21

  Diseases 2

  Phenotypes 12
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:373971 Gutzen R, et al., A modular and adaptable analysis pipeline to compare slow cerebral rhythms across heterogeneous datasets. Cell Rep Methods. 2024 Jan 22;4(1):100681