4933438B17Rik Gene Detail

Summary

• Symbol
  4933438B17Rik
• Name
  RIKEN cDNA 4933438B17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918497
  NCBI Gene: 71247
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:127107853-127165593 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2065 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918497	lncRNA gene	Chr5:127104162-127165605 (+)
129S1/SvImJ	ENSMUSG00200030116	lncRNA gene	Chr5:120839462-120900679 (+)
A/J	ENSMUSG00195013026	lncRNA gene	Chr5:120372912-120434142 (+)
AKR/J	ENSMUSG00220048298	lncRNA gene	Chr5:119850941-119912214 (+)
BALB/cJ	ENSMUSG00180041302	lncRNA gene	Chr5:120480543-120541772 (+)
C3H/HeJ	ENSMUSG00175043560	lncRNA gene	Chr5:122456849-122518116 (+)
C57BL/6NJ	ENSMUSG00215044111	lncRNA gene	Chr5:120517279-120578431 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006206	lincRNA gene	Chr5:119933789-119996408 (+)
CAST/EiJ	ENSTCUG00005042283	lncRNA gene	Chr5:119729171-119790311 (+)
CBA/J	ENSMUSG00210010522	lncRNA gene	Chr5:121207690-121268966 (+)
DBA/2J	ENSMUSG00185008518	lncRNA gene	Chr5:124270558-124332056 (+)
FVB/NJ	ENSMUSG00205047362	lncRNA gene	Chr5:120141333-120202598 (+)
JF1/MsJ	ENSUMUG00000053407	lncRNA gene	Chr5:127155136-127216642 (+)
LP/J	ENSMUSG00230048407	lncRNA gene	Chr5:128365518-128426737 (+)
NOD/ShiLtJ	ENSMUSG00190048366	lncRNA gene	Chr5:120152849-120214306 (+)
NZO/HlLtJ	ENSMUSG00225014788	lncRNA gene	Chr5:136063785-136125265 (+)
PWK/PhJ	ENSLUMG00010044722	lncRNA gene	Chr5:119028663-119090127 (+)
SPRET/EiJ	ENSMSPG00010033840	lncRNA gene	Chr5:122365949-122427727 (+)
WSB/EiJ	ENSIUOG00005020866	lncRNA gene	Chr5:122836606-122897903 (+)

Homology

• Gene Tree
  4933438B17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4933438B17Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  61
• RefSeq
  1

• Ensembl
  ENSMUSG00000105490 (Evidence)
• NCBI Gene
  71247

Representative Sequences			Length	Strain/Species
genomic	71247	NCBI Gene Model | MGI Sequence Detail	57741	C57BL/6J
transcript	NR_040685	RefSeq | MGI Sequence Detail	1163	ZRU/MplStud

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4933438B17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48956	Chr5:127107870-127107885 (+)	25 bp
Tssr48957	Chr5:127107887-127107898 (+)	40 bp