4933428P19Rik Gene Detail

Summary

• Symbol
  4933428P19Rik
• Name
  RIKEN cDNA 4933428P19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918479
  NCBI Gene: 71229
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:62413473-62414848 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918479	lncRNA gene	Chr10:62413473-62414848 (+)
129S1/SvImJ	ENSMUSG00200029214	lncRNA gene	Chr10:59086245-59087620 (+)
A/J	ENSMUSG00195028745	lncRNA gene	Chr10:59393584-59394959 (+)
AKR/J	ENSMUSG00220041898	lncRNA gene	Chr10:59086915-59088290 (+)
BALB/cJ	ENSMUSG00180027442	lncRNA gene	Chr10:59435887-59437262 (+)
C3H/HeJ	ENSMUSG00175027117	lncRNA gene	Chr10:59293453-59294828 (+)
C57BL/6NJ	ENSMUSG00215032849	lncRNA gene	Chr10:59033999-59035374 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002509	antisense lncRNA gene	Chr10:57085556-57086923 (+)
CAST/EiJ	ENSTCUG00005030425	lncRNA gene	Chr10:59091360-59092735 (+)
CBA/J	ENSMUSG00210038452	lncRNA gene	Chr10:59171756-59173131 (+)
DBA/2J	ENSMUSG00185043525	lncRNA gene	Chr10:59513319-59514694 (+)
FVB/NJ	ENSMUSG00205037985	lncRNA gene	Chr10:59186953-59188328 (+)
JF1/MsJ	ENSUMUG00000023529	lncRNA gene	Chr10:60758172-60759547 (+)
LP/J	ENSMUSG00230019333	lncRNA gene	Chr10:61316259-61317634 (+)
NOD/ShiLtJ	ENSMUSG00190039922	lncRNA gene	Chr10:59498953-59500328 (+)
NZO/HlLtJ	ENSMUSG00225045431	lncRNA gene	Chr10:65597274-65598649 (+)
PWK/PhJ	ENSLUMG00010024586	lncRNA gene	Chr10:59146091-59147466 (+)
SPRET/EiJ	ENSMSPG00010027657	lncRNA gene	Chr10:60703661-60705034 (+)
WSB/EiJ	ENSIUOG00005041524	lncRNA gene	Chr10:59068376-59069751 (+)

Homology

• Gene Tree
  4933428P19Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4933428P19Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• UniProt
  1

• Ensembl
  ENSMUSG00000105203 (Evidence)
• NCBI Gene
  71229

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105203	Ensembl Gene Model | MGI Sequence Detail	1376	C57BL/6J
transcript	ENSMUST00000199616	Ensembl | MGI Sequence Detail	1376	Not Applicable
polypeptide	Q8CEP8	UniProt | EBI | MGI Sequence Detail	166	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573