4933436E23Rik Gene Detail

Summary

• Symbol
  4933436E23Rik
• Name
  RIKEN cDNA 4933436E23 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918459
  NCBI Gene: 71209
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:139307190-139330590 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1049 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918459	lncRNA gene	Chr1:139307180-139330590 (+)
129S1/SvImJ	ENSMUSG00200008677	lncRNA gene	Chr1:136939581-136963016 (+)
A/J	ENSMUSG00195018014	lncRNA gene	Chr1:136033614-136057061 (+)
AKR/J	ENSMUSG00220003532	lncRNA gene	Chr1:135893050-135916487 (+)
BALB/cJ	ENSMUSG00180011607	lncRNA gene	Chr1:136537046-136560484 (+)
C3H/HeJ	ENSMUSG00175006942	lncRNA gene	Chr1:136248826-136272259 (+)
C57BL/6NJ	ENSMUSG00215021750	lncRNA gene	Chr1:136239135-136262580 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004517	lincRNA gene	Chr1:130924667-130947050 (+)
CAST/EiJ	ENSTCUG00005013440	lncRNA gene	Chr1:135152475-135176413 (+)
CBA/J	ENSMUSG00210014561	lncRNA gene	Chr1:136197057-136220492 (+)
DBA/2J	ENSMUSG00185033405	lncRNA gene	Chr1:140555563-140579009 (+)
FVB/NJ	ENSMUSG00205002834	lncRNA gene	Chr1:135555964-135579403 (+)
JF1/MsJ	ENSUMUG00000051622	lncRNA gene	Chr1:139624186-139648128 (+)
LP/J	ENSMUSG00230040762	lncRNA gene	Chr1:140071195-140094638 (+)
NOD/ShiLtJ	ENSMUSG00190003008	lncRNA gene	Chr1:136171885-136195314 (+)
NZO/HlLtJ	ENSMUSG00225000136	lncRNA gene	Chr1:143845754-143869195 (+)
PWK/PhJ	ENSLUMG00010002135	lncRNA gene	Chr1:135240860-135264402 (+)
SPRET/EiJ	ENSMSPG00010012809	lncRNA gene	Chr1:138146849-138170083 (+)
WSB/EiJ	ENSIUOG00005029240	lncRNA gene	Chr1:135978353-136002813 (+)

Homology

• Gene Tree
  4933436E23Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving 4933436E23Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000103844 (Evidence)
• NCBI Gene
  71209

Representative Sequences			Length	Strain/Species
genomic	71209	NCBI Gene Model | MGI Sequence Detail	23401	C57BL/6J
transcript	NR_040455	RefSeq | MGI Sequence Detail	1111	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573