4933434M16Rik Gene Detail

Summary

• Symbol
  4933434M16Rik
• Name
  RIKEN cDNA 4933434M16 gene
• Synonyms
  4930468F18Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1918453
  NCBI Gene: 71203
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:112715974-112723300 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 77.58 cM, cytoband E1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  321 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918453	lncRNA gene	Chr11:112715974-112723300 (+)
129S1/SvImJ	ENSMUSG00200033971	lncRNA gene	Chr11:110063175-110070497 (+)
A/J	ENSMUSG00195022558	lncRNA gene	Chr11:109780058-109787385 (+)
AKR/J	ENSMUSG00220036807	lncRNA gene	Chr11:109897540-109904852 (+)
BALB/cJ	ENSMUSG00180019927	lncRNA gene	Chr11:110084985-110092294 (+)
C3H/HeJ	ENSMUSG00175014026	lncRNA gene	Chr11:110032283-110039610 (+)
C57BL/6NJ	ENSMUSG00215018986	lncRNA gene	Chr11:109561035-109568353 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004818	lincRNA gene	Chr11:108673577-108680955 (+)
CAST/EiJ	ENSTCUG00005041960	lncRNA gene	Chr11:109445664-109452972 (+)
CBA/J	ENSMUSG00210013901	lncRNA gene	Chr11:109752608-109759935 (+)
DBA/2J	ENSMUSG00185021292	lncRNA gene	Chr11:110073806-110081124 (+)
FVB/NJ	ENSMUSG00205038533	lncRNA gene	Chr11:109910566-109917815 (+)
JF1/MsJ	ENSUMUG00000030043	lncRNA gene	Chr11:110337962-110345274 (+)
LP/J	ENSMUSG00230050833	lncRNA gene	Chr11:111134845-111142157 (+)
NOD/ShiLtJ	ENSMUSG00190023955	lncRNA gene	Chr11:110083486-110090798 (+)
NZO/HlLtJ	ENSMUSG00225053612	lncRNA gene	Chr11:113187112-113194435 (+)
PWK/PhJ	ENSLUMG00010016530	lncRNA gene	Chr11:109871024-109878318 (+)
SPRET/EiJ	ENSMSPG00010038141	lncRNA gene	Chr11:110390862-110398050 (+)
WSB/EiJ	ENSIUOG00005018673	lncRNA gene	Chr11:109838810-109846082 (+)

Homology

• Gene Tree
  4933434M16Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• UniProt
  1

• Ensembl
  ENSMUSG00000020624 (Evidence)
• NCBI Gene
  71203

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000020624	Ensembl Gene Model | MGI Sequence Detail	7327	C57BL/6J
transcript	ENSMUST00000153429	Ensembl | MGI Sequence Detail	1940	Not Applicable
polypeptide	Q9D3U1	UniProt | EBI | MGI Sequence Detail	122	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:1922200

References

• Summaries
  All 13

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 4933434M16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105748	Chr11:112715989-112716016 (+)	29 bp