4933425M03Rik Gene Detail

Summary

• Symbol
  4933425M03Rik
• Name
  RIKEN cDNA 4933425M03 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918440
  NCBI Gene: 71190
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:85794998-85796541 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918440	lncRNA gene	Chr3:85794998-85796541 (+)
129S1/SvImJ	ENSMUSG00200040457	unclassified gene	Chr3:82631461-82633001 (+)
A/J	ENSMUSG00195053942	unclassified gene	Chr3:82656522-82658061 (+)
AKR/J	ENSMUSG00220051738	unclassified gene	Chr3:82603315-82604855 (+)
BALB/cJ	ENSMUSG00180048524	unclassified gene	Chr3:82772875-82774415 (+)
C3H/HeJ	ENSMUSG00175047772	unclassified gene	Chr3:82583315-82584854 (+)
C57BL/6NJ	ENSMUSG00215050331	unclassified gene	Chr3:83036951-83038494 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000999	unclassified gene	Chr3:78652304-78653821 (+)
CAST/EiJ	ENSTCUG00005001905	unclassified gene	Chr3:82123828-82125360 (+)
CBA/J	ENSMUSG00210047973	unclassified gene	Chr3:82727559-82729098 (+)
DBA/2J	ENSMUSG00185052855	unclassified gene	Chr3:82861774-82863314 (+)
FVB/NJ	ENSMUSG00205006504	unclassified gene	Chr3:81659601-81661145 (+)
JF1/MsJ	ENSUMUG00000050650	unclassified gene	Chr3:82423792-82425329 (+)
LP/J	ENSMUSG00230037193	unclassified gene	Chr3:84851886-84853426 (+)
NOD/ShiLtJ	ENSMUSG00190049308	unclassified gene	Chr3:83119200-83120743 (+)
NZO/HlLtJ	ENSMUSG00225008154	unclassified gene	Chr3:87585945-87587488 (+)
PWK/PhJ	ENSLUMG00010052748	unclassified gene	Chr3:82508724-82510254 (+)
SPRET/EiJ	ENSMSPG00010051082	unclassified gene	Chr3:83318635-83320177 (+)
WSB/EiJ	ENSIUOG00005050530	unclassified gene	Chr3:83107651-83109194 (+)

Homology

• Gene Tree
  4933425M03Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000106508 (Evidence)
• NCBI Gene
  71190

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106508	Ensembl Gene Model | MGI Sequence Detail	1544	C57BL/6J
transcript	AK016922	GenBank | ENA | DDBJ | MGI Sequence Detail	1546	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4933425M03Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr924	Chr3:85795119-85795132 (+)	128 bp