4933411E06Rik Gene Detail

Summary

• Symbol
  4933411E06Rik
• Name
  RIKEN cDNA 4933411E06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918431
  NCBI Gene: 71181
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:50146629-50203977 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1730 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918431	lncRNA gene	Chr1:50146629-50203977 (+)
129S1/SvImJ	ENSMUSG00200001984	lncRNA gene	Chr1:47636477-47637968 (+)
A/J	ENSMUSG00195001990	lncRNA gene	Chr1:47518918-47520409 (+)
AKR/J	ENSMUSG00220004011	lncRNA gene	Chr1:47285248-47286740 (+)
BALB/cJ	ENSMUSG00180003347	lncRNA gene	Chr1:47432984-47434476 (+)
C3H/HeJ	ENSMUSG00175000113	lncRNA gene	Chr1:47548540-47550031 (+)
C57BL/6NJ	ENSMUSG00215003137	lncRNA gene	Chr1:47474736-47476228 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000916	lncRNA gene	Chr1:47362886-47364410 (+)
CBA/J	ENSMUSG00210029245	lncRNA gene	Chr1:47253816-47255307 (+)
DBA/2J	ENSMUSG00185030613	lncRNA gene	Chr1:48373359-48374850 (+)
FVB/NJ	ENSMUSG00205004221	lncRNA gene	Chr1:47197424-47198915 (+)
JF1/MsJ	ENSUMUG00000001899	lncRNA gene	Chr1:47320194-47321697 (+)
LP/J	ENSMUSG00230001595	lncRNA gene	Chr1:48368647-48370139 (+)
NOD/ShiLtJ	ENSMUSG00190002586	lncRNA gene	Chr1:47391800-47393291 (+)
NZO/HlLtJ	ENSMUSG00225010200	lncRNA gene	Chr1:51562535-51564027 (+)
PWK/PhJ	ENSLUMG00010002819	lncRNA gene	Chr1:46900427-46901918 (+)
SPRET/EiJ	ENSMSPG00010013202	lncRNA gene	Chr1:48542357-48543767 (-)
WSB/EiJ	ENSIUOG00005003676	lncRNA gene	Chr1:47082087-47083579 (+)

Homology

• Gene Tree
  4933411E06Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4933411E06Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000099608 (Evidence)
• NCBI Gene
  71181

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099608	Ensembl Gene Model | MGI Sequence Detail	57349	C57BL/6J
transcript	ENSMUST00000186016	Ensembl | MGI Sequence Detail	1493	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573