Ptprjos1 Gene Detail

Summary

• Symbol
  Ptprjos1
• Name
  protein tyrosine phosphatase receptor type J, opposite strand 1
• Synonyms
  4933423P22Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1918408
  NCBI Gene: 71158
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:90309571-90318772 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 50.21 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  307 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918408	lncRNA gene	Chr2:90309571-90318772 (+)
129S1/SvImJ	ENSMUSG00200054278	lncRNA gene	Chr2:87225084-87234273 (+)
A/J	ENSMUSG00195054021	lncRNA gene	Chr2:87345597-87354873 (+)
AKR/J	ENSMUSG00220053180	lncRNA gene	Chr2:87149818-87159089 (+)
BALB/cJ	ENSMUSG00180054932	lncRNA gene	Chr2:87245791-87255063 (+)
C3H/HeJ	ENSMUSG00175054278	lncRNA gene	Chr2:87520700-87529889 (+)
C57BL/6NJ	ENSMUSG00215053874	lncRNA gene	Chr2:87352127-87361316 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003221	antisense lncRNA gene	Chr2:84603169-84612087 (+)
CAST/EiJ	ENSTCUG00005052856	lncRNA gene	Chr2:86754677-86763872 (+)
CBA/J	ENSMUSG00210044261	lncRNA gene	Chr2:87531867-87541056 (+)
DBA/2J	ENSMUSG00185057246	lncRNA gene	Chr2:87242301-87251570 (+)
FVB/NJ	ENSMUSG00205053248	lncRNA gene	Chr2:86544914-86554103 (+)
JF1/MsJ	ENSUMUG00000035932	lncRNA gene	Chr2:87062646-87071923 (+)
LP/J	ENSMUSG00230046124	lncRNA gene	Chr2:88993018-89002289 (+)
NOD/ShiLtJ	ENSMUSG00190052191	lncRNA gene	Chr2:87321078-87330349 (+)
NZO/HlLtJ	ENSMUSG00225053874	lncRNA gene	Chr2:96909378-96918647 (+)
PWK/PhJ	ENSLUMG00010052396	lncRNA gene	Chr2:87050251-87059486 (+)
SPRET/EiJ	ENSMSPG00010052188	lncRNA gene	Chr2:89019358-89028556 (+)
WSB/EiJ	ENSIUOG00005053453	lncRNA gene	Chr2:87052830-87062062 (+)

Homology

• Human Ortholog
  PTPRJ-AS1, PTPRJ antisense RNA 1

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  PTPRJ-AS1, PTPRJ antisense RNA 1
  
• Links
  HGNC:50634

  NCBI Gene ID: 104326192

  
  
• Chr Location
  11p11.2; chr11:48014406-48015855 (-)  GRCh38

---

• MGI Vertebrate Homology
  Ptprjos1 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: PTPRJ-AS1
• Gene Tree
  Ptprjos1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  4 involving Ptprjos1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30

• Ensembl
  ENSMUSG00000085471 (Evidence)
• NCBI Gene
  71158

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085471	Ensembl Gene Model | MGI Sequence Detail	9202	C57BL/6J
transcript	ENSMUST00000126219	Ensembl | MGI Sequence Detail	4595	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:7467379

References

• Summaries
  All 16

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for Ptprjos1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18754	Chr2:90309572-90309582 (+)	6 bp
Tssr18755	Chr2:90318085-90318093 (+)	8,518 bp