4933407L21Rik Gene Detail

Summary

• Symbol
  4933407L21Rik
• Name
  RIKEN cDNA 4933407L21 gene

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:1918391
  NCBI Gene: 71141
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:85856204-85859477 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 43.94 cM, cytoband C5
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  32 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918391	protein coding gene	Chr1:85856204-85868346 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0016237	protein coding gene	Chr1:87150184-87163580 (+)
A/J	MGP_AJ_G0016218	protein coding gene	Chr1:83930750-83942880 (+)
AKR/J	MGP_AKRJ_G0016179	protein coding gene	Chr1:86359785-86371907 (+)
BALB/cJ	MGP_BALBcJ_G0016175	protein coding gene	Chr1:84048798-84060890 (+)
C3H/HeJ	MGP_C3HHeJ_G0016003	protein coding gene	Chr1:86617316-86629450 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016631	protein coding gene	Chr1:90481332-90493662 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0014353	protein coding gene	Chr1:78424170-78436795 (+)
CAST/EiJ	MGP_CASTEiJ_G0015588	protein coding gene	Chr1:85850561-85862756 (+)
CBA/J	MGP_CBAJ_G0015979	protein coding gene	Chr1:93296361-93308453 (+)
DBA/2J	MGP_DBA2J_G0016081	protein coding gene	Chr1:83240312-83252411 (+)
FVB/NJ	MGP_FVBNJ_G0016081	protein coding gene	Chr1:82285037-82297172 (+)
LP/J	MGP_LPJ_G0016153	protein coding gene	Chr1:88263432-88275560 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0016107	protein coding gene	Chr1:96586719-96600301 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016674	protein coding gene	Chr1:86486254-86498351 (+)
PWK/PhJ	MGP_PWKPhJ_G0015375	protein coding gene	Chr1:82521635-82534014 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0015155	protein coding gene	Chr1:85471892-85484068 (+)
WSB/EiJ	MGP_WSBEiJ_G0015652	protein coding gene	Chr1:86133398-86146941 (+)

Homology

• Gene Tree
  4933407L21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  2 involving 4933407L21Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  15 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  2
• UniProt
  2

• Ensembl
  ENSMUSG00000026224 (Evidence)
• NCBI Gene
  71141

Representative Sequences			Length	Strain/Species
genomic	71141	NCBI Gene Model | MGI Sequence Detail	3274	C57BL/6J
transcript	NR_037692	RefSeq | MGI Sequence Detail	1163	C57BL/6
polypeptide	Q9D476	UniProt | EBI | MGI Sequence Detail	131	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 3

References

• Summaries
  All 22

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for 4933407L21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7706	Chr1:85856600-85856624 (+)	408 bp