4933407L21Rik Gene Detail

Summary

• Symbol
  4933407L21Rik
• Name
  RIKEN cDNA 4933407L21 gene

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:1918391
  NCBI Gene: 71141
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:85856204-85859477 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 43.94 cM, cytoband C5
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  177 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918391	protein coding gene	Chr1:85856204-85868346 (+)
129S1/SvImJ	ENSMUSG00200037060	protein coding gene	Chr1:83073487-83076758 (+)
A/J	ENSMUSG00195030524	protein coding gene	Chr1:82645714-82648985 (+)
AKR/J	ENSMUSG00220038557	protein coding gene	Chr1:82767411-82770682 (+)
BALB/cJ	ENSMUSG00180015229	protein coding gene	Chr1:82943415-82946686 (+)
C3H/HeJ	ENSMUSG00175001117	protein coding gene	Chr1:82824598-82827869 (+)
C57BL/6NJ	ENSMUSG00215013801	protein coding gene	Chr1:82745139-82748410 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0014353	protein coding gene	Chr1:78424170-78436795 (+)
CAST/EiJ	ENSTCUG00005007090	protein coding gene	Chr1:82393680-82396999 (+)
CBA/J	ENSMUSG00210012332	protein coding gene	Chr1:82667756-82671027 (+)
DBA/2J	ENSMUSG00185015742	protein coding gene	Chr1:87140483-87143754 (+)
FVB/NJ	ENSMUSG00205026488	protein coding gene	Chr1:82080330-82083601 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230017213	protein coding gene	Chr1:86419430-86422701 (+)
NOD/ShiLtJ	ENSMUSG00190021006	protein coding gene	Chr1:82722852-82726123 (+)
NZO/HlLtJ	ENSMUSG00225002179	protein coding gene	Chr1:90322251-90325522 (+)
PWK/PhJ	ENSLUMG00010034737	protein coding gene	Chr1:82291746-82295033 (+)
SPRET/EiJ	ENSMSPG00010039068	protein coding gene	Chr1:84301011-84304338 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  4933407L21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  2 involving 4933407L21Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  15 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  2
• UniProt
  3

• Ensembl
  ENSMUSG00000026224 (Evidence)
• NCBI Gene
  71141

Representative Sequences			Length	Strain/Species
genomic	71141	NCBI Gene Model | MGI Sequence Detail	3274	C57BL/6J
transcript	NR_037692	RefSeq | MGI Sequence Detail	1163	C57BL/6
polypeptide	F6XKK9	UniProt | EBI | MGI Sequence Detail	131	Not Applicable

Protein
Information

• UniProt
  3 Sequences

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 3

References

• Summaries
  All 23

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for 4933407L21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7706	Chr1:85856600-85856624 (+)	408 bp