4933411O13Rik Gene Detail

Summary

• Symbol
  4933411O13Rik
• Name
  RIKEN cDNA 4933411O13 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918385
  NCBI Gene: 71135
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:66689388-66707959 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 38.25 cM, cytoband C1.3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  537 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918385	lncRNA gene	Chr16:66689388-66707959 (+)
129S1/SvImJ	ENSMUSG00200008775	lncRNA gene	Chr16:63590699-63608979 (+)
A/J	ENSMUSG00195001613	lncRNA gene	Chr16:63302794-63321119 (+)
AKR/J	ENSMUSG00220005726	lncRNA gene	Chr16:63585142-63603455 (+)
BALB/cJ	ENSMUSG00180001728	lncRNA gene	Chr16:63439307-63457629 (+)
C3H/HeJ	ENSMUSG00175004655	lncRNA gene	Chr16:63713697-63732012 (+)
C57BL/6NJ	ENSMUSG00215014875	lncRNA gene	Chr16:63528946-63547291 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002980	antisense lncRNA gene	Chr16:62548658-62567166 (+)
CAST/EiJ	ENSTCUG00005012729	lncRNA gene	Chr16:63554634-63572962 (+)
CBA/J	ENSMUSG00210015386	lncRNA gene	Chr16:63643778-63662061 (+)
CBA/J	ENSMUSG00210015392	lncRNA gene	Chr16:63643786-63645249 (+)
DBA/2J	ENSMUSG00185004571	lncRNA gene	Chr16:63609542-63627864 (+)
FVB/NJ	ENSMUSG00205011889	lncRNA gene	Chr16:63283456-63301787 (+)
JF1/MsJ	ENSUMUG00000016781	lncRNA gene	Chr16:63790308-63809106 (+)
LP/J	ENSMUSG00230007725	lncRNA gene	Chr16:66168425-66186761 (+)
NOD/ShiLtJ	ENSMUSG00190016760	lncRNA gene	Chr16:63662916-63681252 (+)
NZO/HlLtJ	ENSMUSG00225036193	lncRNA gene	Chr16:69401367-69419648 (+)
PWK/PhJ	ENSLUMG00010011986	lncRNA gene	Chr16:63446626-63465568 (+)
SPRET/EiJ	ENSMSPG00010002107	lncRNA gene	Chr16:64153948-64172839 (+)
WSB/EiJ	ENSIUOG00005002393	lncRNA gene	Chr16:63697315-63715636 (+)

Homology

• Gene Tree
  4933411O13Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Genomic Mutations
  1 involving 4933411O13Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• UniProt
  1

• Ensembl
  ENSMUSG00000045178 (Evidence)
• NCBI Gene
  71135

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000045178	Ensembl Gene Model | MGI Sequence Detail	18572	C57BL/6J
transcript	ENSMUST00000050665	Ensembl | MGI Sequence Detail	1464	Not Applicable
polypeptide	Q9CUD1	UniProt | EBI | MGI Sequence Detail	100	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 3

References

• Summaries
  All 13

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:117029 Davisson M, et al., Impact of trisomy on fertility and meiosis in male mice. Hum Reprod. 2007 Feb;22(2):468-76