4933417C20Rik Gene Detail

Summary

• Symbol
  4933417C20Rik
• Name
  RIKEN cDNA 4933417C20 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918378
  NCBI Gene: 71128
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:160040536-160041856 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  92 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918378	lncRNA gene	Chr1:160040513-160042386 (+)
129S1/SvImJ	ENSMUSG00200008139	unclassified gene	Chr1:157525088-157526961 (+)
A/J	ENSMUSG00195024389	unclassified gene	Chr1:156872790-156874663 (+)
AKR/J	ENSMUSG00220014304	unclassified gene	Chr1:156650750-156652623 (+)
BALB/cJ	ENSMUSG00180041142	unclassified gene	Chr1:157095224-157097090 (+)
C3H/HeJ	ENSMUSG00175047835	unclassified gene	Chr1:157160410-157162283 (+)
C57BL/6NJ	ENSMUSG00215041839	unclassified gene	Chr1:157038449-157040322 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000495	unclassified gene	Chr1:150844174-150845925 (+)
CAST/EiJ	ENSTCUG00005021528	unclassified gene	Chr1:155697764-155699637 (+)
CBA/J	ENSMUSG00210021735	unclassified gene	Chr1:157051411-157053284 (+)
DBA/2J	ENSMUSG00185047726	unclassified gene	Chr1:161316489-161318355 (+)
FVB/NJ	ENSMUSG00205013203	unclassified gene	Chr1:156159067-156160940 (+)
JF1/MsJ	ENSUMUG00000038656	unclassified gene	Chr1:160471320-160473196 (+)
LP/J	ENSMUSG00230018012	unclassified gene	Chr1:160926521-160928394 (+)
NOD/ShiLtJ	ENSMUSG00190040704	unclassified gene	Chr1:156897632-156899505 (+)
NZO/HlLtJ	ENSMUSG00225005731	unclassified gene	Chr1:164542834-164544707 (+)
PWK/PhJ	ENSLUMG00010047095	unclassified gene	Chr1:155862776-155864646 (+)
SPRET/EiJ	ENSMSPG00010046073	unclassified gene	Chr1:159239852-159241735 (+)
WSB/EiJ	ENSIUOG00005015935	unclassified gene	Chr1:156491137-156493010 (+)

Expression

• cDNA Data
  3

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000103006 (Evidence), ENSMUSG00000131911 (Evidence)
• NCBI Gene
  71128

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000131911	Ensembl Gene Model | MGI Sequence Detail	1321	C57BL/6J
transcript	ENSMUST00000309187	Ensembl | MGI Sequence Detail	1321	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:2138107

References

• Summaries
  All 12
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4933417C20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9642	Chr1:160040662-160040717 (+)	154 bp