4933417C20Rik Gene Detail

Summary

• Symbol
  4933417C20Rik
• Name
  RIKEN cDNA 4933417C20 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918378
  NCBI Gene: 71128
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:160040513-160042386 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  28 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918378	lncRNA gene	Chr1:160040513-160042386 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0000670	unclassified gene	Chr1:165406334-165408207 (+)
A/J	MGP_AJ_G0000644	unclassified gene	Chr1:158693607-158695480 (+)
AKR/J	MGP_AKRJ_G0000633	unclassified gene	Chr1:163538083-163539956 (+)
BALB/cJ	MGP_BALBcJ_G0000636	unclassified gene	Chr1:159241044-159242910 (+)
C3H/HeJ	MGP_C3HHeJ_G0000623	unclassified gene	Chr1:163725644-163727517 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0000753	unclassified gene	Chr1:171019068-171020941 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000495	unclassified gene	Chr1:150844174-150845925 (+)
CAST/EiJ	MGP_CASTEiJ_G0000616	unclassified gene	Chr1:163333255-163335128 (+)
CBA/J	MGP_CBAJ_G0000614	unclassified gene	Chr1:177088199-177090072 (+)
DBA/2J	MGP_DBA2J_G0000618	unclassified gene	Chr1:157667382-157669248 (+)
FVB/NJ	MGP_FVBNJ_G0000632	unclassified gene	Chr1:156076091-156077964 (+)
LP/J	MGP_LPJ_G0000676	unclassified gene	Chr1:166517838-166519711 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000624	unclassified gene	Chr1:184581523-184583396 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000745	unclassified gene	Chr1:163357306-163359179 (+)
PWK/PhJ	MGP_PWKPhJ_G0000568	unclassified gene	Chr1:156811008-156812878 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0000543	unclassified gene	Chr1:162205977-162207860 (+)
WSB/EiJ	MGP_WSBEiJ_G0000620	unclassified gene	Chr1:163531648-163533521 (+)

Homology

• Gene Tree
  4933417C20Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000103006 (Evidence)
• NCBI Gene
  71128

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103006	Ensembl Gene Model | MGI Sequence Detail	1874	C57BL/6J
transcript	NR_190035	RefSeq | MGI Sequence Detail	1189	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:2138107

References

• Summaries
  All 12
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4933417C20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9642	Chr1:160040662-160040717 (+)	177 bp