4933407E24Rik Gene Detail

Summary

• Symbol
  4933407E24Rik
• Name
  RIKEN cDNA 4933407E24 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918352
  NCBI Gene: 108809
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:124462972-124469331 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 57.83 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  217 from dbSNP Build 142
• Strain Annotations
  30

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918352	lncRNA gene	Chr4:124462506-124469346 (+)
129S1/SvImJ	ENSMUSG00200012330	protein coding gene	Chr4:117895319-117901405 (+)
129S1/SvImJ	ENSMUSG00200014577	lncRNA gene	Chr4:117895384-117900841 (+)
A/J	ENSMUSG00195033039	lncRNA gene	Chr4:119217129-119222600 (+)
A/J	ENSMUSG00195027094	protein coding gene	Chr4:119217064-119223164 (+)
AKR/J	ENSMUSG00220021317	protein coding gene	Chr4:118192073-118198164 (+)
AKR/J	ENSMUSG00220022839	lncRNA gene	Chr4:118192138-118197600 (+)
BALB/cJ	ENSMUSG00180046916	lncRNA gene	Chr4:116870055-116875502 (+)
BALB/cJ	ENSMUSG00180037438	protein coding gene	Chr4:116869990-116876066 (+)
C3H/HeJ	ENSMUSG00175027024	lncRNA gene	Chr4:117883023-117888468 (+)
C3H/HeJ	ENSMUSG00175021048	protein coding gene	Chr4:117882958-117889032 (+)
C57BL/6NJ	ENSMUSG00215037496	protein coding gene	Chr4:119375344-119381419 (+)
C57BL/6NJ	ENSMUSG00215040003	lncRNA gene	Chr4:119375409-119380855 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005916	lincRNA gene	Chr4:114335832-114341662 (+)
CAST/EiJ	ENSTCUG00005046531	lncRNA gene	Chr4:118734189-118739960 (+)
CBA/J	ENSMUSG00210052025	protein coding gene	Chr4:117511817-117517881 (+)
CBA/J	ENSMUSG00210052615	lncRNA gene	Chr4:117511882-117517317 (+)
DBA/2J	ENSMUSG00185045801	protein coding gene	Chr4:119044464-119050540 (+)
DBA/2J	ENSMUSG00185048041	lncRNA gene	Chr4:119044529-119049976 (+)
FVB/NJ	ENSMUSG00205027946	lncRNA gene	Chr4:117243566-117249025 (+)
FVB/NJ	ENSMUSG00205014403	protein coding gene	Chr4:117243501-117249589 (+)
JF1/MsJ	ENSUMUG00000027327	lncRNA gene	Chr4:119666013-119671573 (+)
LP/J	ENSMUSG00230040128	protein coding gene	Chr4:122833231-122839317 (+)
LP/J	ENSMUSG00230047709	lncRNA gene	Chr4:122833296-122838753 (+)
NOD/ShiLtJ	ENSMUSG00190043728	protein coding gene	Chr4:117243258-117249352 (+)
NOD/ShiLtJ	ENSMUSG00190046051	lncRNA gene	Chr4:117243323-117248788 (+)
NZO/HlLtJ	ENSMUSG00225017454	lncRNA gene	Chr4:128737418-128742864 (+)
PWK/PhJ	ENSLUMG00010046582	lncRNA gene	Chr4:116688338-116693924 (+)
SPRET/EiJ	ENSMSPG00010041028	lncRNA gene	Chr4:118776268-118781799 (+)
WSB/EiJ	ENSIUOG00005048523	lncRNA gene	Chr4:117104432-117109853 (+)

Homology

• Gene Tree
  4933407E24Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving 4933407E24Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  50
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000073759 (Evidence)
• NCBI Gene
  108809

Representative Sequences			Length	Strain/Species
genomic	108809	NCBI Gene Model | MGI Sequence Detail	6360	C57BL/6J
transcript	NR_045819	RefSeq | MGI Sequence Detail	1873	C57BL/6
polypeptide	Q3TVA1	UniProt | EBI | MGI Sequence Detail	122	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 17

  Phenotypes 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12