4933421A08Rik Gene Detail

Summary

• Symbol
  4933421A08Rik
• Name
  RIKEN cDNA 4933421A08 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918347
  NCBI Gene: 71097
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:122855081-122871058 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 57.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  382 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918347	lncRNA gene	Chr4:122855081-122871058 (+)
129S1/SvImJ	ENSMUSG00200014539	lncRNA gene	Chr4:116289935-116292101 (+)
A/J	ENSMUSG00195032542	lncRNA gene	Chr4:117619911-117622068 (+)
AKR/J	ENSMUSG00220023050	lncRNA gene	Chr4:116589097-116591263 (+)
BALB/cJ	ENSMUSG00180046168	lncRNA gene	Chr4:115259342-115261504 (+)
C3H/HeJ	ENSMUSG00175025352	lncRNA gene	Chr4:116272379-116274546 (+)
C57BL/6NJ	ENSMUSG00215039423	lncRNA gene	Chr4:117766126-117768292 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013701	unclassified non-coding RNA gene	Chr4:112741051-112743357 (+)
CAST/EiJ	ENSTCUG00005045839	lncRNA gene	Chr4:117127975-117130176 (+)
CBA/J	ENSMUSG00210052870	lncRNA gene	Chr4:115878729-115880891 (+)
DBA/2J	ENSMUSG00185047602	lncRNA gene	Chr4:117433906-117436063 (+)
FVB/NJ	ENSMUSG00205026617	lncRNA gene	Chr4:115642223-115644360 (+)
JF1/MsJ	ENSUMUG00000024833	lncRNA gene	Chr4:118068594-118070796 (+)
LP/J	ENSMUSG00230047132	lncRNA gene	Chr4:121228039-121230210 (+)
NOD/ShiLtJ	ENSMUSG00190046888	lncRNA gene	Chr4:115635886-115638028 (+)
NZO/HlLtJ	ENSMUSG00225016602	lncRNA gene	Chr4:127136122-127138293 (+)
PWK/PhJ	ENSLUMG00010047272	lncRNA gene	Chr4:115089383-115091633 (+)
SPRET/EiJ	ENSMSPG00010041611	lncRNA gene	Chr4:117205530-117207679 (+)
WSB/EiJ	ENSIUOG00005048712	lncRNA gene	Chr4:115503541-115505703 (+)

Homology

• Gene Tree
  4933421A08Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving 4933421A08Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000086443 (Evidence)
• NCBI Gene
  71097

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086443	Ensembl Gene Model | MGI Sequence Detail	15978	C57BL/6J
transcript	ENSMUST00000284072	Ensembl | MGI Sequence Detail	1680	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for 4933421A08Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38837	Chr4:122855067-122855142 (+)	24 bp