4933412E12Rik Gene Detail

Summary

• Symbol
  4933412E12Rik
• Name
  RIKEN cDNA 4933412E12 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918336
  NCBI Gene: 71086
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr10:116786467-116799184 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 64.98 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  497 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918336	lncRNA gene	Chr10:116785662-116805010 (+)
129S1/SvImJ	ENSMUSG00200028024	lncRNA gene	Chr10:113195601-113209131 (+)
A/J	ENSMUSG00195023325	lncRNA gene	Chr10:113630353-113643882 (+)
AKR/J	ENSMUSG00220015209	lncRNA gene	Chr10:113203977-113217507 (+)
BALB/cJ	ENSMUSG00180017309	lncRNA gene	Chr10:113647276-113660809 (+)
C3H/HeJ	ENSMUSG00175024751	lncRNA gene	Chr10:113592177-113605707 (+)
C57BL/6NJ	ENSMUSG00215023024	lncRNA gene	Chr10:113288579-113302109 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034014	lncRNA gene	Chr10:112609909-112623664 (+)
CBA/J	ENSMUSG00210021781	lncRNA gene	Chr10:113441743-113455274 (+)
DBA/2J	ENSMUSG00185009834	lncRNA gene	Chr10:113566661-113580190 (+)
FVB/NJ	ENSMUSG00205031927	lncRNA gene	Chr10:112891239-112904769 (+)
JF1/MsJ	ENSUMUG00000020955	lncRNA gene	Chr10:114882972-114896554 (+)
LP/J	ENSMUSG00230027145	lncRNA gene	Chr10:115516108-115529678 (+)
NOD/ShiLtJ	ENSMUSG00190018305	lncRNA gene	Chr10:113691818-113705351 (+)
NZO/HlLtJ	ENSMUSG00225018795	lncRNA gene	Chr10:119770481-119784011 (+)
PWK/PhJ	ENSLUMG00010013436	lncRNA gene	Chr10:113268886-113282438 (+)
SPRET/EiJ	ENSMSPG00010016659	lncRNA gene	Chr10:115212051-115225487 (+)
WSB/EiJ	ENSIUOG00005013951	lncRNA gene	Chr10:113283535-113297071 (+)

Homology

• Gene Tree
  4933412E12Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Gene trapped
  4
• Genomic Mutations
  1 involving 4933412E12Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  12

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  60
• RefSeq
  2

• Ensembl
  ENSMUSG00000112627 (Evidence)
• NCBI Gene
  71086

Representative Sequences			Length	Strain/Species
genomic	71086	NCBI Gene Model | MGI Sequence Detail	12718	C57BL/6J
transcript	NR_038025	RefSeq | MGI Sequence Detail	1724	C57BL/6

Molecular
Reagents

• All nucleic 12

  cDNA 12

  
  

  Microarray probesets 3

References

• Summaries
  All 19

  Phenotypes 8
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 4933412E12Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95885	Chr10:116786458-116786530 (+)	27 bp
Tssr95886	Chr10:116786538-116786552 (+)	78 bp
Tssr95887	Chr10:116798333-116798337 (+)	11,868 bp
Tssr95888	Chr10:116798349-116798365 (+)	11,890 bp
Tssr95889	Chr10:116798367-116798372 (+)	11,903 bp