Sox5os1 MGI Mouse Gene Detail - MGI:1918330 - SRY (sex determining region Y)-box 5, opposite strand 1

Sequence Map

Chr6:143967579-143969893 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918330	antisense lncRNA gene	Chr6:143967579-143969893 (+)
129S1/SvImJ	ENSMUSG00200033864	lncRNA gene	Chr6:141511753-141513623 (+)
A/J	ENSMUSG00195008461	lncRNA gene	Chr6:140417905-140419775 (+)
AKR/J	ENSMUSG00220032779	lncRNA gene	Chr6:138644327-138646197 (+)
BALB/cJ	ENSMUSG00180018186	lncRNA gene	Chr6:140545148-140547018 (+)
C3H/HeJ	ENSMUSG00175035677	lncRNA gene	Chr6:140444489-140446359 (+)
C57BL/6NJ	ENSMUSG00215028606	lncRNA gene	Chr6:140614472-140616342 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003959	antisense lncRNA gene	Chr6:141821775-141823673 (+)
CAST/EiJ	ENSTCUG00005037869	lncRNA gene	Chr6:141252568-141254438 (+)
CBA/J	ENSMUSG00210005253	lncRNA gene	Chr6:140507141-140509011 (+)
DBA/2J	ENSMUSG00185023217	lncRNA gene	Chr6:141157822-141159692 (+)
FVB/NJ	ENSMUSG00205033351	lncRNA gene	Chr6:139495506-139497377 (+)
JF1/MsJ	ENSUMUG00000011502	lncRNA gene	Chr6:139823819-139825688 (+)
LP/J	ENSMUSG00230005750	lncRNA gene	Chr6:142273382-142275253 (+)
NOD/ShiLtJ	ENSMUSG00190006907	lncRNA gene	Chr6:140983350-140985220 (+)
NZO/HlLtJ	ENSMUSG00225013903	lncRNA gene	Chr6:145147628-145149498 (+)
PWK/PhJ	ENSLUMG00010037025	lncRNA gene	Chr6:138905382-138907250 (+)
SPRET/EiJ	ENSMSPG00010017456	lncRNA gene	Chr6:142806605-142808482 (+)
WSB/EiJ	ENSIUOG00005023837	lncRNA gene	Chr6:141189303-141191177 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	ENSMUSG00000087302	Ensembl Gene Model \| MGI Sequence Detail	2315	C57BL/6J	± kb
	transcript	ENSMUST00000156994	Ensembl \| MGI Sequence Detail	1585	Not Applicable

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Summaries

All 9
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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