4933401H06Rik Gene Detail

Summary

• Symbol
  4933401H06Rik
• Name
  RIKEN cDNA 4933401H06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918288
  NCBI Gene: 71038
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:135539455-135546030 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  385 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918288	lncRNA gene	Chr3:135534164-135546052 (-)
129S1/SvImJ	ENSMUSG00200003623	lncRNA gene	Chr3:132315313-132325970 (-)
A/J	ENSMUSG00195004617	lncRNA gene	Chr3:132437662-132444231 (-)
AKR/J	ENSMUSG00220023318	lncRNA gene	Chr3:130889440-130900102 (-)
BALB/cJ	ENSMUSG00180012252	lncRNA gene	Chr3:132359435-132366004 (-)
C3H/HeJ	ENSMUSG00175019984	lncRNA gene	Chr3:131960302-131966871 (-)
C57BL/6NJ	ENSMUSG00215027779	lncRNA gene	Chr3:132697431-132703999 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013654	unclassified non-coding RNA gene	Chr3:129086985-129098633 (-)
CAST/EiJ	ENSTCUG00005004016	lncRNA gene	Chr3:133031206-133041834 (-)
CBA/J	ENSMUSG00210033441	lncRNA gene	Chr3:132551187-132561851 (-)
DBA/2J	ENSMUSG00185003623	lncRNA gene	Chr3:133188816-133199480 (-)
FVB/NJ	ENSMUSG00205031222	lncRNA gene	Chr3:131502735-131513399 (-)
JF1/MsJ	ENSUMUG00000033858	lncRNA gene	Chr3:131932252-131942747 (-)
LP/J	ENSMUSG00230003411	lncRNA gene	Chr3:135129266-135139923 (-)
NOD/ShiLtJ	ENSMUSG00190005132	lncRNA gene	Chr3:133567740-133578404 (-)
NZO/HlLtJ	ENSMUSG00225006212	lncRNA gene	Chr3:137608138-137618800 (-)
PWK/PhJ	ENSLUMG00010016052	lncRNA gene	Chr3:131871880-131881975 (-)
SPRET/EiJ	ENSMSPG00010014706	lncRNA gene	Chr3:132967683-132977683 (-)
WSB/EiJ	ENSIUOG00005019248	lncRNA gene	Chr3:132695305-132705954 (-)

Homology

• Gene Tree
  4933401H06Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4933401H06Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  46
• RefSeq
  1

• Ensembl
  ENSMUSG00000106306 (Evidence)
• NCBI Gene
  71038

Representative Sequences			Length	Strain/Species
genomic	71038	NCBI Gene Model | MGI Sequence Detail	6576	C57BL/6J
transcript	NR_040540	RefSeq | MGI Sequence Detail	937	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 14

  Diseases 1

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for 4933401H06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr35840	Chr3:135546015-135546049 (-)	-2 bp
Tssr35839	Chr3:135545502-135545520 (-)	519 bp