4933402C06Rik Gene Detail

Summary

• Symbol
  4933402C06Rik
• Name
  RIKEN cDNA 4933402C06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918279
  NCBI Gene: 71029
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:40324161-40340684 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  729 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918279	lncRNA gene	Chr7:40278896-40340829 (+)
129S1/SvImJ	ENSMUSG00200025689	lncRNA gene	Chr7:28129346-28145883 (+)
A/J	ENSMUSG00195048657	lncRNA gene	Chr7:31841090-31857615 (+)
AKR/J	ENSMUSG00220032922	lncRNA gene	Chr7:19018664-19035203 (+)
BALB/cJ	ENSMUSG00180022887	lncRNA gene	Chr7:29431388-29447907 (+)
C3H/HeJ	ENSMUSG00175040397	lncRNA gene	Chr7:29621784-29638322 (+)
C57BL/6NJ	ENSMUSG00215023129	lncRNA gene	Chr7:28589415-28605955 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006521	lincRNA gene	Chr7:39888062-39904312 (+)
CAST/EiJ	ENSTCUG00005049565	lncRNA gene	Chr7:31536219-31553058 (+)
CBA/J	ENSMUSG00210028616	lncRNA gene	Chr7:29640886-29657421 (+)
DBA/2J	ENSMUSG00185050731	lncRNA gene	Chr7:32979044-32995760 (+)
FVB/NJ	ENSMUSG00205022318	lncRNA gene	Chr7:29733984-29750513 (+)
JF1/MsJ	ENSUMUG00000032378	lncRNA gene	Chr7:37454771-37471493 (+)
LP/J	ENSMUSG00230015039	lncRNA gene	Chr7:38699598-38716123 (+)
NOD/ShiLtJ	ENSMUSG00190009258	lncRNA gene	Chr7:29728850-29745378 (+)
NZO/HlLtJ	ENSMUSG00225009164	lncRNA gene	Chr7:37013918-37030473 (+)
PWK/PhJ	ENSLUMG00010022821	lncRNA gene	Chr7:28482521-28499261 (+)
SPRET/EiJ	ENSMSPG00010006207	lncRNA gene	Chr7:28494059-28510611 (+)
WSB/EiJ	ENSIUOG00005009529	lncRNA gene	Chr7:29354478-29371183 (+)

Homology

• Gene Tree
  4933402C06Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  1

• Ensembl
  ENSMUSG00000102004 (Evidence)
• NCBI Gene
  71029

Representative Sequences			Length	Strain/Species
genomic	71029	NCBI Gene Model | MGI Sequence Detail	16524	C57BL/6J
transcript	NR_045504	RefSeq | MGI Sequence Detail	1000	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4933402C06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr65957	Chr7:40324158-40324168 (+)	2 bp