4933403J19Rik Gene Detail

Summary

• Symbol
  4933403J19Rik
• Name
  RIKEN cDNA 4933403J19 gene
• Synonyms
  Gm50217

• Feature Type
  lncRNA gene
• IDs
  MGI:1918271
  NCBI Gene: 115489026
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:43909014-43916376 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  325 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918271	lncRNA gene	Chr19:43908912-43916376 (+)
129S1/SvImJ	ENSMUSG00200021556	lncRNA gene	Chr19:40632763-40640225 (+)
A/J	ENSMUSG00195018697	lncRNA gene	Chr19:40755284-40762745 (+)
AKR/J	ENSMUSG00220019501	lncRNA gene	Chr19:40552269-40559732 (+)
BALB/cJ	ENSMUSG00180022517	lncRNA gene	Chr19:41007716-41015178 (+)
C3H/HeJ	ENSMUSG00175006470	lncRNA gene	Chr19:40542859-40550318 (+)
C57BL/6NJ	ENSMUSG00215005063	lncRNA gene	Chr19:40598756-40606211 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015818	lncRNA gene	Chr19:40191464-40198921 (+)
CBA/J	ENSMUSG00210019500	lncRNA gene	Chr19:40622542-40630001 (+)
DBA/2J	ENSMUSG00185009419	lncRNA gene	Chr19:41131386-41138846 (+)
FVB/NJ	ENSMUSG00205007580	lncRNA gene	Chr19:40056237-40063699 (+)
JF1/MsJ	ENSUMUG00000048474	lncRNA gene	Chr19:41284595-41292036 (+)
LP/J	ENSMUSG00230025272	lncRNA gene	Chr19:41902723-41910185 (+)
NOD/ShiLtJ	ENSMUSG00190005656	lncRNA gene	Chr19:40481205-40488665 (+)
NZO/HlLtJ	ENSMUSG00225044270	lncRNA gene	Chr19:45490466-45497925 (+)
PWK/PhJ	ENSLUMG00010001213	lncRNA gene	Chr19:40451276-40458729 (+)
SPRET/EiJ	ENSMSPG00010023233	lncRNA gene	Chr19:40196360-40203810 (+)
WSB/EiJ	ENSIUOG00005039524	lncRNA gene	Chr19:39998239-40005704 (+)

Homology

• Gene Tree
  4933403J19Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  3

• Ensembl
  ENSMUSG00000118000 (Evidence)
• NCBI Gene
  115489026

Representative Sequences			Length	Strain/Species
genomic	115489026	NCBI Gene Model | MGI Sequence Detail	7363	C57BL/6J
transcript	NR_190435	RefSeq | MGI Sequence Detail	1866	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:6303010

References

• Summaries
  All 8
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90

TSS for 4933403J19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr156549	Chr19:43909505-43909516 (+)	497 bp