4931419H13Rik Gene Detail

Summary

• Symbol
  4931419H13Rik
• Name
  RIKEN cDNA 4931419H13 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918220
  NCBI Gene: 70970
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:54962663-54991423 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1091 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918220	lncRNA gene	Chr3:54962623-55001404 (+)
129S1/SvImJ	ENSMUSG00200023395	lncRNA gene	Chr3:51815393-51844157 (+)
A/J	ENSMUSG00195032976	lncRNA gene	Chr3:51752017-51780780 (+)
AKR/J	ENSMUSG00220032263	lncRNA gene	Chr3:51810024-51850664 (+)
BALB/cJ	ENSMUSG00180027139	lncRNA gene	Chr3:51830833-51860276 (+)
C3H/HeJ	ENSMUSG00175008872	lncRNA gene	Chr3:51672489-51701932 (+)
C57BL/6NJ	ENSMUSG00215009520	lncRNA gene	Chr3:52110021-52138790 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003364	antisense lncRNA gene	Chr3:48632502-48664246 (+)
CAST/EiJ	ENSTCUG00005009967	lncRNA gene	Chr3:51483395-51512568 (+)
CBA/J	ENSMUSG00210003787	lncRNA gene	Chr3:51793887-51823336 (+)
DBA/2J	ENSMUSG00185028303	lncRNA gene	Chr3:52000938-52029727 (+)
FVB/NJ	ENSMUSG00205009524	lncRNA gene	Chr3:50979491-51013710 (+)
JF1/MsJ	ENSUMUG00000027236	lncRNA gene	Chr3:51431342-51460872 (+)
LP/J	ENSMUSG00230004969	lncRNA gene	Chr3:53969997-53998756 (+)
NOD/ShiLtJ	ENSMUSG00190034963	lncRNA gene	Chr3:52157812-52198450 (+)
NZO/HlLtJ	ENSMUSG00225017292	lncRNA gene	Chr3:56582373-56611134 (+)
PWK/PhJ	ENSLUMG00010010224	lncRNA gene	Chr3:51554170-51583521 (+)
SPRET/EiJ	ENSMSPG00010007603	lncRNA gene	Chr3:52313534-52351737 (+)
WSB/EiJ	ENSIUOG00005009261	lncRNA gene	Chr3:51954351-51983153 (+)

Homology

• Gene Tree
  4931419H13Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving 4931419H13Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1

• Ensembl
  ENSMUSG00000106589 (Evidence)
• NCBI Gene
  70970

Representative Sequences			Length	Strain/Species
genomic	70970	NCBI Gene Model | MGI Sequence Detail	28761	C57BL/6J
transcript	NR_040593	RefSeq | MGI Sequence Detail	973	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 16

  Diseases 1

  Phenotypes 7
• Earliest
  J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for 4931419H13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29145	Chr3:54962638-54962657 (+)	-15 bp
Tssr29146	Chr3:54962658-54962690 (+)	11 bp