4931415C17Rik Gene Detail

Summary

• Symbol
  4931415C17Rik
• Name
  RIKEN cDNA 4931415C17 gene
• Synonyms
  2810048G06Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1918216
  NCBI Gene: 70966
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:12722427-12729225 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 5.73 cM, cytoband A2
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  365 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918216	lncRNA gene	Chr8:12722172-12729229 (+)
129S1/SvImJ	ENSMUSG00200013214	lncRNA gene	Chr8:9610563-9617594 (+)
A/J	ENSMUSG00195011402	lncRNA gene	Chr8:9965234-9972279 (+)
AKR/J	ENSMUSG00220011535	lncRNA gene	Chr8:9694465-9701510 (+)
BALB/cJ	ENSMUSG00180004802	lncRNA gene	Chr8:9604305-9611349 (+)
C3H/HeJ	ENSMUSG00175008365	lncRNA gene	Chr8:9764151-9771197 (+)
C57BL/6NJ	ENSMUSG00215011297	lncRNA gene	Chr8:9638507-9645551 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013829	unclassified non-coding RNA gene	Chr8:9123488-9124596 (+)
CAST/EiJ	ENSTCUG00005021158	lncRNA gene	Chr8:9607920-9615072 (+)
CBA/J	ENSMUSG00210011253	lncRNA gene	Chr8:9598032-9605077 (+)
DBA/2J	ENSMUSG00185004030	lncRNA gene	Chr8:9730770-9737813 (+)
FVB/NJ	ENSMUSG00205005840	lncRNA gene	Chr8:9623470-9630515 (+)
JF1/MsJ	ENSUMUG00000047225	lncRNA gene	Chr8:9752474-9760437 (+)
LP/J	ENSMUSG00230024410	lncRNA gene	Chr8:11911142-11919099 (+)
NOD/ShiLtJ	ENSMUSG00190011545	lncRNA gene	Chr8:9722891-9729936 (+)
NZO/HlLtJ	ENSMUSG00225020141	lncRNA gene	Chr8:19770561-19777592 (+)
PWK/PhJ	ENSLUMG00010011790	lncRNA gene	Chr8:9671884-9679842 (+)
SPRET/EiJ	ENSMSPG00010017504	lncRNA gene	Chr8:9787659-9795221 (+)
WSB/EiJ	ENSIUOG00005005811	lncRNA gene	Chr8:9624769-9631802 (+)

Homology

• Gene Tree
  4931415C17Rik
  

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000054910 (Evidence)
• NCBI Gene
  70966

Representative Sequences			Length	Strain/Species
genomic	70966	NCBI Gene Model | MGI Sequence Detail	6799	C57BL/6J
transcript	NR_166502	RefSeq | MGI Sequence Detail	2251	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:1919931

References

• Summaries
  All 14
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 4931415C17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr2493	Chr8:12722426-12722457 (+)	15 bp