Stamos Gene Detail

Summary

• Symbol
  Stamos
• Name
  signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand
• Synonyms
  4921530L18Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1918207
  NCBI Gene: 70957
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:14075144-14078745 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 10.36 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  6 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918207	lncRNA gene	Chr2:14074234-14078745 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015394	unclassified non-coding RNA gene	Chr2:11576979-11580581 (-)
A/J	MGP_AJ_G0015369	unclassified non-coding RNA gene	Chr2:11147838-11151440 (-)
AKR/J	MGP_AKRJ_G0015333	unclassified non-coding RNA gene	Chr2:11472883-11476485 (-)
BALB/cJ	MGP_BALBcJ_G0015333	unclassified non-coding RNA gene	Chr2:11141352-11144954 (-)
C3H/HeJ	MGP_C3HHeJ_G0015157	unclassified non-coding RNA gene	Chr2:11428863-11432465 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015787	unclassified non-coding RNA gene	Chr2:11900105-11903707 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013528	unclassified non-coding RNA gene	Chr2:10712381-10715968 (-)
CAST/EiJ	MGP_CASTEiJ_G0014708	unclassified non-coding RNA gene	Chr2:11406468-11410027 (-)
CBA/J	MGP_CBAJ_G0015136	unclassified non-coding RNA gene	Chr2:12406155-12409824 (-)
DBA/2J	MGP_DBA2J_G0015231	unclassified non-coding RNA gene	Chr2:11041857-11045459 (-)
FVB/NJ	MGP_FVBNJ_G0015238	unclassified non-coding RNA gene	Chr2:10942486-10945878 (-)
LP/J	MGP_LPJ_G0015311	unclassified non-coding RNA gene	Chr2:11507084-11510686 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015264	unclassified non-coding RNA gene	Chr2:12258603-12261622 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015826	unclassified non-coding RNA gene	Chr2:11379844-11383446 (-)
PWK/PhJ	MGP_PWKPhJ_G0014498	unclassified non-coding RNA gene	Chr2:10928788-10932453 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014285	unclassified non-coding RNA gene	Chr2:11447386-11450961 (-)
WSB/EiJ	MGP_WSBEiJ_G0014815	unclassified non-coding RNA gene	Chr2:11506297-11509896 (-)

Homology

• Gene Tree
  Stamos
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  8
• Gene trapped
  8
• Find Mice (IMSR)
  5 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  712
• Tissues
  5
• cDNA Data
  7
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000086657 (Evidence)
• NCBI Gene
  70957

Representative Sequences			Length	Strain/Species
genomic	70957	NCBI Gene Model | MGI Sequence Detail	3602	C57BL/6J
transcript	NR_038162	RefSeq | MGI Sequence Detail	800	C57BL/6

Molecular
Reagents

• All nucleic 10

  cDNA 9

  Primer pair 1

  
  

  Microarray probesets 1

References

• Summaries
  All 15

  Developmental Gene Expression 1

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:189715 Chen H, et al., Identification of novel markers of mouse fetal ovary development. PLoS One. 2012;7(7):e41683

TSS for Stamos:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr22732	Chr2:14078662-14078678 (-)	75 bp