4921520J07Rik Gene Detail

Summary

• Symbol
  4921520J07Rik
• Name
  RIKEN cDNA 4921520J07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918169
  NCBI Gene: 70919
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:128123959-128126121 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918169	lncRNA gene	Chr7:128123959-128126121 (-)
129S1/SvImJ	ENSMUSG00200027098	lncRNA gene	Chr7:114640253-114641163 (-)
A/J	ENSMUSG00195045884	lncRNA gene	Chr7:119146472-119147381 (-)
AKR/J	ENSMUSG00220016454	lncRNA gene	Chr7:112600899-112601808 (-)
BALB/cJ	ENSMUSG00180013700	lncRNA gene	Chr7:115841692-115842601 (-)
C3H/HeJ	ENSMUSG00175019134	lncRNA gene	Chr7:116568452-116569361 (-)
C57BL/6NJ	ENSMUSG00215036549	lncRNA gene	Chr7:115836686-115837595 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049364	lncRNA gene	Chr7:119077624-119078533 (-)
CBA/J	ENSMUSG00210023444	lncRNA gene	Chr7:116317662-116318571 (-)
DBA/2J	ENSMUSG00185050394	lncRNA gene	Chr7:120630504-120631413 (-)
FVB/NJ	ENSMUSG00205041255	lncRNA gene	Chr7:116270971-116271880 (-)
JF1/MsJ	ENSUMUG00000052076	lncRNA gene	Chr7:125654828-125655738 (-)
LP/J	ENSMUSG00230053280	lncRNA gene	Chr7:126738751-126739661 (-)
NOD/ShiLtJ	ENSMUSG00190018638	lncRNA gene	Chr7:116464150-116465059 (-)
NZO/HlLtJ	ENSMUSG00225012855	lncRNA gene	Chr7:124981702-124982611 (-)
PWK/PhJ	ENSLUMG00010043252	lncRNA gene	Chr7:114814478-114815388 (-)
SPRET/EiJ	ENSMSPG00010014169	lncRNA gene	Chr7:116071141-116072048 (-)
WSB/EiJ	ENSIUOG00005034146	lncRNA gene	Chr7:117167260-117168169 (-)

Homology

• Gene Tree
  4921520J07Rik
  

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120564 (Evidence)
• NCBI Gene
  70919

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120564	Ensembl Gene Model | MGI Sequence Detail	2163	C57BL/6J
transcript	ENSMUST00000244197	Ensembl | MGI Sequence Detail	2163	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4921520J07Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr75118	Chr7:128125174-128125182 (-)	943 bp