4921520N01Rik Gene Detail

Summary

• Symbol
  4921520N01Rik
• Name
  RIKEN cDNA 4921520N01 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918166
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:26953376-26956710 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  199 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918166	lncRNA gene	Chr13:26953376-26956710 (+)
129S1/SvImJ	ENSMUSG00200033189	lncRNA gene	Chr13:24113017-24116357 (+)
A/J	ENSMUSG00195038655	lncRNA gene	Chr13:23251146-23254480 (+)
AKR/J	ENSMUSG00220013009	lncRNA gene	Chr13:23061691-23065025 (+)
BALB/cJ	ENSMUSG00180023472	lncRNA gene	Chr13:23556410-23559744 (+)
C3H/HeJ	ENSMUSG00175033117	lncRNA gene	Chr13:23579137-23582471 (+)
C57BL/6NJ	ENSMUSG00215015394	lncRNA gene	Chr13:23718081-23721415 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011155	lncRNA gene	Chr13:23748530-23751871 (+)
CBA/J	ENSMUSG00210026815	lncRNA gene	Chr13:23523798-23527132 (+)
DBA/2J	ENSMUSG00185020775	lncRNA gene	Chr13:24345348-24348682 (+)
FVB/NJ	ENSMUSG00205034953	lncRNA gene	Chr13:23344726-23348060 (+)
JF1/MsJ	ENSUMUG00000016217	lncRNA gene	Chr13:24002906-24006241 (+)
LP/J	ENSMUSG00230021541	lncRNA gene	Chr13:33666756-33670090 (+)
NOD/ShiLtJ	ENSMUSG00190038892	lncRNA gene	Chr13:23327459-23330793 (+)
NZO/HlLtJ	ENSMUSG00225046196	lncRNA gene	Chr13:27452952-27456286 (+)
PWK/PhJ	ENSLUMG00010030610	lncRNA gene	Chr13:22849017-22852352 (+)
SPRET/EiJ	ENSMSPG00010028202	lncRNA gene	Chr13:22755053-22758359 (+)
WSB/EiJ	ENSIUOG00005017093	lncRNA gene	Chr13:22890111-22893547 (+)

Homology

• Gene Tree
  4921520N01Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 4921520N01Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000114342 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114342	Ensembl Gene Model | MGI Sequence Detail	3335	C57BL/6J
transcript	ENSMUST00000224024	Ensembl | MGI Sequence Detail	3335	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 8
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:141688 Goldsworthy M, et al., Role of the transcription factor sox4 in insulin secretion and impaired glucose tolerance. Diabetes. 2008 Aug;57(8):2234-44

TSS for 4921520N01Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119011	Chr13:26953349-26953360 (+)	-21 bp