Nckap5los Gene Detail

Summary

• Symbol
  Nckap5los
• Name
  NCK-associated protein 5-like, opposite strand
• Synonyms
  4921518J05Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1918162
  NCBI Gene: 102637966
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:99325582-99333194 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 56.13 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  282 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918162	antisense lncRNA gene	Chr15:99325582-99344254 (+)
129S1/SvImJ	ENSMUSG00200052144	lncRNA gene	Chr15:96528564-96536176 (+)
A/J	ENSMUSG00195046498	lncRNA gene	Chr15:96394936-96402617 (+)
AKR/J	ENSMUSG00220049914	lncRNA gene	Chr15:96402126-96409738 (+)
BALB/cJ	ENSMUSG00180047091	lncRNA gene	Chr15:96304625-96312248 (+)
C3H/HeJ	ENSMUSG00175047295	lncRNA gene	Chr15:96574956-96582637 (+)
C57BL/6NJ	ENSMUSG00215051663	lncRNA gene	Chr15:96363997-96371609 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002937	antisense lncRNA gene	Chr15:93132754-93140306 (+)
CAST/EiJ	ENSTCUG00005046866	lncRNA gene	Chr15:95846392-95853957 (+)
CBA/J	ENSMUSG00210033235	lncRNA gene	Chr15:96361595-96369217 (+)
DBA/2J	ENSMUSG00185042454	lncRNA gene	Chr15:96408534-96416146 (+)
FVB/NJ	ENSMUSG00205046761	lncRNA gene	Chr15:96112717-96120253 (+)
JF1/MsJ	ENSUMUG00000057318	lncRNA gene	Chr15:95862626-95870251 (+)
LP/J	ENSMUSG00230041039	lncRNA gene	Chr15:99751948-99759560 (+)
NOD/ShiLtJ	ENSMUSG00190050797	lncRNA gene	Chr15:96379264-96386801 (+)
NZO/HlLtJ	ENSMUSG00225043208	lncRNA gene	Chr15:100000926-100008538 (+)
PWK/PhJ	ENSLUMG00010050779	lncRNA gene	Chr15:96083343-96090879 (+)
SPRET/EiJ	ENSMSPG00010050969	lncRNA gene	Chr15:97888858-97896420 (+)
WSB/EiJ	ENSIUOG00005041030	lncRNA gene	Chr15:96490291-96497913 (+)

Homology

• Gene Tree
  Nckap5los
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  21 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Nckap5los
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  4

• Ensembl
  ENSMUSG00000089968 (Evidence)
• NCBI Gene
  102637966

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089968	Ensembl Gene Model | MGI Sequence Detail	7613	C57BL/6J
transcript	ENSMUST00000159738	Ensembl | MGI Sequence Detail	1712	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 31

  Diseases 1

  Phenotypes 21
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:387680 Ahn B, et al., Disorganization of Transcriptional Regulation and Alteration of Keratin Family Gene Expression in Hairy Ear Mice. Genes (Basel). 2026 Jan 31;17(2)