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Efcab3 Gene Detail
Summary
  • Symbol
    Efcab3
  • Name
    EF-hand calcium binding domain 3
  • Synonyms
    4921510J17Rik, Efcab15, Gm11639
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918144
    NCBI Gene: 70894
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:104954418-105008363 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, Syntenic
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    158 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918144
 protein coding gene Chr11:104576533-105008363 (+)
129S1/SvImJ MGP_129S1SvImJ_G0019280
 protein coding gene Chr11:108126610-108326806 (+)
A/J MGP_AJ_G0019248
 protein coding gene Chr11:103502531-103695825 (+)
AKR/J MGP_AKRJ_G0019217
 protein coding gene Chr11:106658381-106845839 (+)
BALB/cJ MGP_BALBcJ_G0019222
 protein coding gene Chr11:103941423-104135849 (+)
C3H/HeJ MGP_C3HHeJ_G0019031
 protein coding gene Chr11:107069575-107129295 (+)
C57BL/6NJ MGP_C57BL6NJ_G0019672
 protein coding gene Chr11:111624394-111684594 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017297
 protein coding gene Chr11:100867476-101055177 (+)
CAST/EiJ MGP_CASTEiJ_G0018585
 protein coding gene Chr11:107964539-108174641 (+)
CBA/J MGP_CBAJ_G0019000
 protein coding gene Chr11:116245943-116317709 (+)
DBA/2J MGP_DBA2J_G0019112
 protein coding gene Chr11:103010667-103204866 (+)
FVB/NJ MGP_FVBNJ_G0019103
 protein coding gene Chr11:102662252-102715074 (+)
LP/J MGP_LPJ_G0019182
 protein coding gene Chr11:108585814-108794282 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019133
 protein coding gene Chr11:115542597-115602150 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0019709
 protein coding gene Chr11:107255218-107317181 (+)
PWK/PhJ MGP_PWKPhJ_G0018350
 protein coding gene Chr11:104096983-104293085 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018140
 protein coding gene Chr11:106870954-107066130 (+)
WSB/EiJ MGP_WSBEiJ_G0018635
 protein coding gene Chr11:107083747-107284362 (+)



Homology
more
  • Human Ortholog
    EFCAB3, EF-hand calcium binding domain 3
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    EFCAB3, EF-hand calcium binding domain 3
  • Links
    NCBI Gene ID: 146779
    neXtProt AC: NX_Q8N7B9
    UniProt: Q8N7B9

  • Chr Location
    17q23.2; chr17:62343941-62416480 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 2 alleles in 2 genetic backgrounds
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Male mice homozygous for a mutation are viable and show normal fertility.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    8
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000020690 Ensembl Gene Model | MGI Sequence Detail 53946 C57BL/6J ±  kb
    transcript ENSMUST00000021029 Ensembl | MGI Sequence Detail 1757 Not Applicable  
    polypeptide ENSMUSP00000021029 Ensembl | MGI Sequence Detail 432 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 8
      cDNA 8

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:3651790, MGI:5816263
    References
    more
    • Summaries
      All 30
      Gene Ontology 1
      Phenotypes 7
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:267883 Lilue J, et al., Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci. Nat Genet. 2018 Nov;50(11):1574-1583
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/16/2024
    MGI 6.23     		The Jackson Laboratory