4921513I03Rik Gene Detail

Summary

• Symbol
  4921513I03Rik
• Name
  RIKEN cDNA 4921513I03 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918124
  NCBI Gene: 70874
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:120601637-120614791 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 68.73 cM, cytoband D3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  445 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918124	lncRNA gene	Chr10:120601500-120620354 (+)
129S1/SvImJ	ENSMUSG00200027011	lncRNA gene	Chr10:116953061-116966208 (+)
A/J	ENSMUSG00195022491	lncRNA gene	Chr10:117364247-117377413 (+)
AKR/J	ENSMUSG00220015286	lncRNA gene	Chr10:116995539-117008691 (+)
BALB/cJ	ENSMUSG00180017579	lncRNA gene	Chr10:117376753-117389908 (+)
C3H/HeJ	ENSMUSG00175025538	lncRNA gene	Chr10:117373257-117386406 (+)
C57BL/6NJ	ENSMUSG00215017188	lncRNA gene	Chr10:117011987-117025146 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033161	lncRNA gene	Chr10:116335837-116349016 (+)
CBA/J	ENSMUSG00210021300	lncRNA gene	Chr10:117210006-117223166 (+)
DBA/2J	ENSMUSG00185009411	lncRNA gene	Chr10:117328095-117341247 (+)
FVB/NJ	ENSMUSG00205024771	lncRNA gene	Chr10:116614922-116628071 (+)
JF1/MsJ	ENSUMUG00000027965	lncRNA gene	Chr10:118601743-118615229 (+)
LP/J	ENSMUSG00230025309	lncRNA gene	Chr10:119281237-119294384 (+)
NOD/ShiLtJ	ENSMUSG00190018412	lncRNA gene	Chr10:117421146-117434290 (+)
NZO/HlLtJ	ENSMUSG00225038258	lncRNA gene	Chr10:123530917-123544066 (+)
PWK/PhJ	ENSLUMG00010013190	lncRNA gene	Chr10:117003776-117017141 (+)
SPRET/EiJ	ENSMSPG00010017506	lncRNA gene	Chr10:118919966-118933918 (+)
WSB/EiJ	ENSIUOG00005014210	lncRNA gene	Chr10:117061245-117074385 (+)

Homology

• Gene Tree
  4921513I03Rik
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  620
• Tissues
  4
• cDNA Data
  4
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000044544 (Evidence)
• NCBI Gene
  70874

Representative Sequences			Length	Strain/Species
genomic	70874	NCBI Gene Model | MGI Sequence Detail	13155	C57BL/6J
transcript	NR_038000	RefSeq | MGI Sequence Detail	1576	C57BL/6
polypeptide	Q9D5W2	UniProt | EBI | MGI Sequence Detail	113	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

References

• Summaries
  All 13

  Developmental Gene Expression 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 4921513I03Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr96005	Chr10:120611885-120611887 (+)	10,249 bp