4921515L22Rik Gene Detail

Summary

• Symbol
  4921515L22Rik
• Name
  RIKEN cDNA 4921515L22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918118
  NCBI Gene: 70868
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:87971767-87981258 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  239 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918118	lncRNA gene	Chr10:87971767-87981258 (+)
129S1/SvImJ	ENSMUSG00200030457	lncRNA gene	Chr10:84469703-84471315 (+)
A/J	ENSMUSG00195023232	lncRNA gene	Chr10:84914231-84915843 (+)
AKR/J	ENSMUSG00220022225	lncRNA gene	Chr10:84520742-84522354 (+)
BALB/cJ	ENSMUSG00180035653	lncRNA gene	Chr10:84917276-84918888 (+)
C3H/HeJ	ENSMUSG00175022602	lncRNA gene	Chr10:84807733-84809345 (+)
C57BL/6NJ	ENSMUSG00215034535	lncRNA gene	Chr10:84472309-84473921 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035987	lncRNA gene	Chr10:84181246-84182865 (+)
CBA/J	ENSMUSG00210037821	lncRNA gene	Chr10:84648182-84649794 (+)
DBA/2J	ENSMUSG00185045011	lncRNA gene	Chr10:84873868-84875480 (+)
FVB/NJ	ENSMUSG00205023180	lncRNA gene	Chr10:84496512-84498128 (+)
JF1/MsJ	ENSUMUG00000030688	lncRNA gene	Chr10:86205326-86206933 (+)
LP/J	ENSMUSG00230018669	lncRNA gene	Chr10:86752260-86753872 (+)
NOD/ShiLtJ	ENSMUSG00190019861	lncRNA gene	Chr10:84899509-84901121 (+)
NZO/HlLtJ	ENSMUSG00225053831	lncRNA gene	Chr10:91022824-91024436 (+)
PWK/PhJ	ENSLUMG00010023314	lncRNA gene	Chr10:84496420-84498036 (+)
SPRET/EiJ	ENSMSPG00010035765	lncRNA gene	Chr10:85994822-85996444 (+)
WSB/EiJ	ENSIUOG00005039205	lncRNA gene	Chr10:84579015-84580627 (+)

Homology

• Gene Tree
  4921515L22Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000112406 (Evidence)
• NCBI Gene
  70868

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112406	Ensembl Gene Model | MGI Sequence Detail	9492	C57BL/6J
transcript	ENSMUST00000337768	Ensembl | MGI Sequence Detail	1579	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4921515L22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95140	Chr10:87971764-87971786 (+)	8 bp
Tssr95141	Chr10:87971789-87971792 (+)	24 bp