Slco6d1 MGI Mouse Gene Detail - MGI:1918116 - solute carrier organic anion transporter family, member 6d1

Symbol

Slco6d1
Name

solute carrier organic anion transporter family, member 6d1
Synonyms

4921511I05Rik

Feature Type

protein coding gene
IDs

MGI:1918116
NCBI Gene: 70866
Alliance

genome feature page
Transcription Start Sites

1 TSS

Sequence Map

Chr1:98348849-98444716 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 1, 47.76 cM, cytoband D
Mapping Data

2 experiments

SNPs within 2kb

3014 from dbSNP Build 142
Strain Annotations

19

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918116	protein coding gene	Chr1:98348812-98444716 (+)
129S1/SvImJ	ENSMUSG00200000222	protein coding gene	Chr1:95538314-95634173 (+)
A/J	ENSMUSG00195000277	protein coding gene	Chr1:95059646-95155531 (+)
AKR/J	ENSMUSG00220000146	protein coding gene	Chr1:95364069-95459912 (+)
BALB/cJ	ENSMUSG00180005465	protein coding gene	Chr1:95367538-95463407 (+)
C3H/HeJ	ENSMUSG00175005547	protein coding gene	Chr1:95267586-95363464 (+)
C57BL/6NJ	ENSMUSG00215000323	protein coding gene	Chr1:95255858-95351726 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0014479	protein coding gene	Chr1:90918670-91096852 (+)
CAST/EiJ	ENSTCUG00005000096	protein coding gene	Chr1:94799754-94894765 (+)
CBA/J	ENSMUSG00210000064	protein coding gene	Chr1:95117560-95213425 (+)
DBA/2J	ENSMUSG00185013977	protein coding gene	Chr1:99585367-99681219 (+)
FVB/NJ	ENSMUSG00205000694	protein coding gene	Chr1:94454991-94550861 (+)
JF1/MsJ	ENSUMUG00000021341	protein coding gene	Chr1:98315647-98413966 (+)
LP/J	ENSMUSG00230020630	protein coding gene	Chr1:98848919-98944777 (+)
NOD/ShiLtJ	ENSMUSG00190000276	protein coding gene	Chr1:95173965-95269832 (+)
NZO/HlLtJ	ENSMUSG00225000243	protein coding gene	Chr1:102760232-102856089 (+)
PWK/PhJ	ENSLUMG00010006331	protein coding gene	Chr1:94737621-94851572 (+)
SPRET/EiJ	ENSMSPG00010000599	protein coding gene	Chr1:96863108-96952894 (+)
WSB/EiJ	ENSIUOG00005000218	protein coding gene	Chr1:94850497-94948181 (+)

Human Ortholog

SLCO6A1, solute carrier organic anion transporter family member 6A1

Vertebrate Orthologs

2

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

SLCO6A1, solute carrier organic anion transporter family member 6A1
Synonyms

CT48, GST, OATP6A1, OATP-I, OATPY
Links

HGNC:23613

NCBI Gene ID: 133482

UniProt: Q86UG4
Chr Location

5q21.1; chr5:102371774-102499016 (-) GRCh38

MGI Vertebrate Homology

Slco6d1 stringent orthology
1 human;1 mouse;1 rat
HCOP

vertebrate homology predictions: SLCO6A1
Gene Tree

Slco6d1

less

Phenotype Summary

1 phenotype from 1 allele in 1 genetic background
12 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

7
Chemically induced (other)

1
Endonuclease-mediated

3
Gene trapped

1
Radiation induced

1
Targeted

1
Genomic Mutations

2 involving Slco6d1
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

48 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

less

All GO Annotations

4
GO References

3

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

less

Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

5

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas

less

All Sequences

56
RefSeq

18
UniProt

5
CCDS

CCDS48332.1, CCDS48333.1

Ensembl

ENSMUSG00000026336 (Evidence)
NCBI Gene

70866

			Length	Strain/Species	Flank
genomic	ENSMUSG00000026336	Ensembl Gene Model \| MGI Sequence Detail	95868	C57BL/6J	± kb
transcript	ENSMUST00000027575	Ensembl \| MGI Sequence Detail	2328	Not Applicable
polypeptide	ENSMUSP00000027575	Ensembl \| MGI Sequence Detail	683	Not Applicable

less

UniProt

5 Sequences
InterPro Domains

IPR002350 Kazal domain

IPR036058 Kazal domain superfamily

IPR036259 MFS transporter superfamily

IPR004156 Organic anion transporter polypeptide

less

All nucleic 5

cDNA 5

Microarray probesets 2

Summaries

All 31

Gene Ontology 3

Phenotypes 12
Earliest

J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
Latest

J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

TSS for Slco6d1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8236	Chr1:98348817-98348859 (+)	-11 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 09/01/2026 MGI 6.24