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Ccdc93 Gene Detail
Summary
  • Symbol
    Ccdc93
  • Name
    coiled-coil domain containing 93
  • Synonyms
    4633402D15Rik, 9230102M16Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918079
    NCBI Gene: 70829
  • Alliance
    gene page
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:121358796-121434189 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 52.97 cM, cytoband E2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    778 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918079
 protein coding gene Chr1:121358778-121434189 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016410
 protein coding gene Chr1:124260420-124343156 (+)
A/J MGP_AJ_G0016393
 protein coding gene Chr1:119799305-119876499 (+)
AKR/J MGP_AKRJ_G0016358
 protein coding gene Chr1:123308127-123388520 (+)
BALB/cJ MGP_BALBcJ_G0016353
 protein coding gene Chr1:120082974-120157078 (+)
C3H/HeJ MGP_C3HHeJ_G0016179
 protein coding gene Chr1:123485080-123565848 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016814
 protein coding gene Chr1:128996553-129075394 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014527
 protein coding gene Chr1:113428988-113501810 (+)
CAST/EiJ MGP_CASTEiJ_G0015760
 protein coding gene Chr1:122308916-122389844 (+)
CBA/J MGP_CBAJ_G0016152
 protein coding gene Chr1:133451679-133536362 (+)
DBA/2J MGP_DBA2J_G0016258
 protein coding gene Chr1:118821723-118896148 (+)
FVB/NJ MGP_FVBNJ_G0016257
 protein coding gene Chr1:117586879-117662374 (+)
LP/J MGP_LPJ_G0016329
 protein coding gene Chr1:125610800-125690198 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016282
 protein coding gene Chr1:139143137-139223093 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016850
 protein coding gene Chr1:123065491-123148896 (+)
PWK/PhJ MGP_PWKPhJ_G0015546
 protein coding gene Chr1:117832574-117908550 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015334
 protein coding gene Chr1:121987768-122064094 (+)
WSB/EiJ MGP_WSBEiJ_G0015822
 protein coding gene Chr1:122948222-123024381 (+)



Homology
more
  • Human Ortholog
    CCDC93, coiled-coil domain containing 93
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCDC93, coiled-coil domain containing 93
  • Links
    NCBI Gene ID: 54520
    neXtProt AC: NX_Q567U6
    UniProt: Q567U6

  • Chr Location
    2q14.1; chr2:117915478-118014133 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    713
  • Tissues
    4
  • cDNA Data
    90
  • Literature Summary
    1
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 70829 NCBI Gene Model | MGI Sequence Detail 75394 C57BL/6J ±  kb
transcript NM_001025156 RefSeq | MGI Sequence Detail 7272 C57BL/6  
polypeptide Q7TQK5 UniProt | EBI | MGI Sequence Detail 629 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 90
    cDNA 90

    Microarray probesets 7
Other
Accession IDs
less
MGI:1924929
References
more
  • Summaries
    All 34
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 9
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/12/2023
MGI 6.22 		The Jackson Laboratory