4632415L05Rik Pseudogene Detail

Summary

• Symbol
  4632415L05Rik
• Name
  RIKEN cDNA 4632415L05 gene

• Feature Type
  pseudogene
• IDs
  MGI:1918058
  NCBI Gene: 70808
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:19949146-19950173 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 6.06 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  175 from dbSNP Build 142
• Strain Annotations
  28

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918058	pseudogene	Chr3:19949035-19953148 (+)
129S1/SvImJ	ENSMUSG00200018258	pseudogene	Chr3:16727338-16733501 (+)
129S1/SvImJ	ENSMUSG00200018223	protein coding gene	Chr3:16727296-16741214 (+)
A/J	ENSMUSG00195016633	pseudogene	Chr3:16779598-16785767 (+)
AKR/J	ENSMUSG00220009485	pseudogene	Chr3:16740007-16746166 (+)
AKR/J	ENSMUSG00220008759	protein coding gene	Chr3:16739965-16753883 (+)
BALB/cJ	ENSMUSG00180001084	pseudogene	Chr3:16801332-16807491 (+)
BALB/cJ	ENSMUSG00180000955	protein coding gene	Chr3:16801290-16815176 (+)
C3H/HeJ	ENSMUSG00175003154	pseudogene	Chr3:16799587-16805756 (+)
C57BL/6NJ	ENSMUSG00215001374	pseudogene	Chr3:17009535-17015693 (+)
C57BL/6NJ	ENSMUSG00215001215	protein coding gene	Chr3:17009493-17023398 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005579	lincRNA gene	Chr3:15092306-15093396 (+)
CAST/EiJ	ENSTCUG00005025093	pseudogene	Chr3:16735114-16741311 (+)
CBA/J	ENSMUSG00210001872	pseudogene	Chr3:16774877-16781046 (+)
DBA/2J	ENSMUSG00185000663	pseudogene	Chr3:16993331-16999490 (+)
DBA/2J	ENSMUSG00185000627	protein coding gene	Chr3:16993289-17007191 (+)
FVB/NJ	ENSMUSG00205002558	pseudogene	Chr3:16296229-16302388 (+)
FVB/NJ	ENSMUSG00205002359	protein coding gene	Chr3:16296187-16310093 (+)
JF1/MsJ	ENSUMUG00000020306	pseudogene	Chr3:16587365-16593579 (+)
LP/J	ENSMUSG00230003840	protein coding gene	Chr3:18898981-18912895 (+)
LP/J	ENSMUSG00230004589	pseudogene	Chr3:18899023-18905186 (+)
NOD/ShiLtJ	ENSMUSG00190001888	protein coding gene	Chr3:17155254-17169168 (+)
NOD/ShiLtJ	ENSMUSG00190002413	pseudogene	Chr3:17155296-17161459 (+)
NZO/HlLtJ	ENSMUSG00225006800	protein coding gene	Chr3:21545011-21558921 (+)
NZO/HlLtJ	ENSMUSG00225007388	pseudogene	Chr3:21545053-21551216 (+)
PWK/PhJ	ENSLUMG00010003217	pseudogene	Chr3:16610557-16616759 (+)
SPRET/EiJ	ENSMSPG00010001894	pseudogene	Chr3:16725067-16727942 (+)
WSB/EiJ	ENSIUOG00005001588	pseudogene	Chr3:17032397-17038569 (+)

Homology

• Gene Tree
  4632415L05Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving 4632415L05Rik
• Incidental Mutations
  APF
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000048106 (Evidence)
• NCBI Gene
  70808

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000048106	Ensembl Gene Model | MGI Sequence Detail	1028	C57BL/6J
transcript	ENSMUST00000059704	Ensembl | MGI Sequence Detail	1028	Not Applicable
polypeptide	Q78IR3	UniProt | EBI | MGI Sequence Detail	122	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 4

Other
Accession IDs

MGI:2139780

References

• Summaries
  All 17

  Diseases 1

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for 4632415L05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28533	Chr3:19949260-19949288 (+)	128 bp