6330408M09Rik Gene Detail

Summary

• Symbol
  6330408M09Rik
• Name
  RIKEN cDNA 6330408M09 gene
• Synonyms
  Gm49623

• Feature Type
  lncRNA gene
• IDs
  MGI:1917999
  NCBI Gene: 70749
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:22946517-22947938 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  152 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917999	lncRNA gene	Chr16:22946517-22947938 (+)
129S1/SvImJ	ENSMUSG00200048017	lncRNA gene	Chr16:19950382-19951514 (+)
A/J	ENSMUSG00195037076	lncRNA gene	Chr16:19504877-19506009 (+)
AKR/J	ENSMUSG00220047389	lncRNA gene	Chr16:19824303-19825436 (+)
BALB/cJ	ENSMUSG00180040289	lncRNA gene	Chr16:19745484-19746617 (+)
C3H/HeJ	ENSMUSG00175050615	lncRNA gene	Chr16:19890396-19891529 (+)
C57BL/6NJ	ENSMUSG00215043383	lncRNA gene	Chr16:19617597-19618731 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036056	lncRNA gene	Chr16:20221226-20222365 (+)
CBA/J	ENSMUSG00210047435	lncRNA gene	Chr16:19912084-19913217 (+)
DBA/2J	ENSMUSG00185035291	lncRNA gene	Chr16:19850874-19852007 (+)
FVB/NJ	ENSMUSG00205047053	lncRNA gene	Chr16:19851537-19852669 (+)
JF1/MsJ	ENSUMUG00000037612	lncRNA gene	Chr16:20072835-20073968 (+)
LP/J	ENSMUSG00230033714	lncRNA gene	Chr16:22429894-22431027 (+)
NOD/ShiLtJ	ENSMUSG00190051664	lncRNA gene	Chr16:19992281-19993413 (+)
NZO/HlLtJ	ENSMUSG00225039008	lncRNA gene	Chr16:25681027-25682160 (+)
PWK/PhJ	ENSLUMG00010050488	lncRNA gene	Chr16:19895646-19896777 (+)
SPRET/EiJ	ENSMSPG00010047287	lncRNA gene	Chr16:19777973-19779109 (+)
WSB/EiJ	ENSIUOG00005044479	lncRNA gene	Chr16:20096901-20098018 (+)

Homology

• Gene Tree
  6330408M09Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000116733 (Evidence)
• NCBI Gene
  70749

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116733	Ensembl Gene Model | MGI Sequence Detail	1422	C57BL/6J
transcript	ENSMUST00000231407	Ensembl | MGI Sequence Detail	1422	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

Other
Accession IDs

MGI:6215046

References

• Summaries
  All 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 6330408M09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137658	Chr16:22946533-22946574 (+)	37 bp