6330403L08Rik Gene Detail

Summary

• Symbol
  6330403L08Rik
• Name
  RIKEN cDNA 6330403L08 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1917994
  NCBI Gene: 70744
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:138980811-138986336 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 77.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917994	lncRNA gene	Chr5:138980811-138986336 (+)
129S1/SvImJ	ENSMUSG00200042421	lncRNA gene	Chr5:132849461-132854982 (+)
A/J	ENSMUSG00195045404	lncRNA gene	Chr5:132469856-132475378 (+)
AKR/J	ENSMUSG00220023130	lncRNA gene	Chr5:131732024-131737546 (+)
BALB/cJ	ENSMUSG00180036187	lncRNA gene	Chr5:132566368-132571890 (+)
C3H/HeJ	ENSMUSG00175049327	lncRNA gene	Chr5:134494620-134500141 (+)
C57BL/6NJ	ENSMUSG00215042388	lncRNA gene	Chr5:132424950-132430472 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003796	antisense lncRNA gene	Chr5:131705518-131711038 (+)
CAST/EiJ	ENSTCUG00005035563	lncRNA gene	Chr5:131894450-131899999 (+)
CBA/J	ENSMUSG00210024029	lncRNA gene	Chr5:133311839-133317360 (+)
DBA/2J	ENSMUSG00185054904	lncRNA gene	Chr5:136327187-136332708 (+)
FVB/NJ	ENSMUSG00205049598	lncRNA gene	Chr5:132127093-132132614 (+)
JF1/MsJ	ENSUMUG00000053690	lncRNA gene	Chr5:139206984-139212544 (+)
LP/J	ENSMUSG00230049362	lncRNA gene	Chr5:140440241-140445762 (+)
NOD/ShiLtJ	ENSMUSG00190045035	lncRNA gene	Chr5:132266009-132271530 (+)
NZO/HlLtJ	ENSMUSG00225023902	lncRNA gene	Chr5:147914972-147920493 (+)
PWK/PhJ	ENSLUMG00010019421	lncRNA gene	Chr5:130935162-130940691 (+)
SPRET/EiJ	ENSMSPG00010039432	lncRNA gene	Chr5:134534030-134539578 (+)
WSB/EiJ	ENSIUOG00005040541	lncRNA gene	Chr5:134800808-134806329 (+)

Homology

• Gene Tree
  6330403L08Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000075585 (Evidence)
• NCBI Gene
  70744

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000075585	Ensembl Gene Model | MGI Sequence Detail	5526	C57BL/6J
transcript	ENSMUST00000187923	Ensembl | MGI Sequence Detail	5522	Not Applicable
polypeptide	Q3UHK0	UniProt | EBI | MGI Sequence Detail	319	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 5

References

• Summaries
  All 14

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 6330403L08Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49482	Chr5:138980793-138980821 (+)	-4 bp
Tssr49483	Chr5:138981980-138982018 (+)	1,188 bp