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3830408C21Rik Gene Detail
Summary
  • Symbol
    3830408C21Rik
  • Name
    RIKEN cDNA 3830408C21 gene
Location &
Maps
more
  • Sequence Map
    Chr13:107159078-107170026 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 58.22 cM, cytoband D1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    468 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917940
 lncRNA gene Chr13:107157983-107285081 (+)
129S1/SvImJ ENSMUSG00200031914
 lncRNA gene Chr13:101589485-101622383 (+)
A/J ENSMUSG00195013765
 lncRNA gene Chr13:102158717-102190649 (+)
AKR/J ENSMUSG00220027542
 lncRNA gene Chr13:100585430-100617358 (+)
BALB/cJ ENSMUSG00180030774
 lncRNA gene Chr13:102732840-102765810 (+)
C3H/HeJ ENSMUSG00175026996
 lncRNA gene Chr13:102817091-102849998 (+)
C57BL/6NJ ENSMUSG00215023771
 lncRNA gene Chr13:102807116-102840147 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018874
 protein coding gene Chr13:100411543-100413221 (+)
CAST/EiJ ENSTCUG00005026026
 lncRNA gene Chr13:101907634-101940043 (+)
CBA/J ENSMUSG00210010962
 lncRNA gene Chr13:102142762-102175663 (+)
DBA/2J ENSMUSG00185027623
 lncRNA gene Chr13:105904735-105937637 (+)
FVB/NJ ENSMUSG00205007475
 lncRNA gene Chr13:101581162-101614133 (+)
JF1/MsJ ENSUMUG00000013725
 lncRNA gene Chr13:105430669-105463283 (+)
LP/J ENSMUSG00230008112
 lncRNA gene Chr13:116057648-116090541 (+)
NOD/ShiLtJ ENSMUSG00190020047
 lncRNA gene Chr13:102466440-102498363 (+)
NZO/HlLtJ no annotation
PWK/PhJ ENSLUMG00010010488
 lncRNA gene Chr13:101445672-101477894 (+)
SPRET/EiJ ENSMSPG00010017101
 lncRNA gene Chr13:103059914-103092658 (+)
WSB/EiJ ENSIUOG00005009999
 lncRNA gene Chr13:101607654-101640626 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    7
Sequences &
Gene Models
less
  • All Sequences
    153
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100040322 NCBI Gene Model | MGI Sequence Detail 10949 C57BL/6J ±  kb
transcript NR_015471 RefSeq | MGI Sequence Detail 1898 C57BL/6  
polypeptide Q8C743 UniProt | EBI | MGI Sequence Detail 113 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 2
References
more
  • Summaries
    All 16
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory