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Tbccd1 Gene Detail
Summary
  • Symbol
    Tbccd1
  • Name
    TBCC domain containing 1
  • Synonyms
    5730478M09Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917823
    NCBI Gene: 70573
  • Alliance
    genome feature page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:22631964-22676419 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 13.67 cM, cytoband B1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1543 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917823
 protein coding gene Chr16:22631964-22676441 (-)
129S1/SvImJ ENSMUSG00200043731
 protein coding gene Chr16:19637022-19660748 (-)
A/J ENSMUSG00195029668
 protein coding gene Chr16:19195366-19219092 (-)
AKR/J ENSMUSG00220040946
 protein coding gene Chr16:19514780-19538506 (-)
BALB/cJ ENSMUSG00180035498
 protein coding gene Chr16:19435957-19459679 (-)
C3H/HeJ ENSMUSG00175045394
 protein coding gene Chr16:19580895-19604617 (-)
C57BL/6NJ ENSMUSG00215039198
 protein coding gene Chr16:19308097-19331827 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020606
 protein coding gene Chr16:20050022-20090400 (-)
CAST/EiJ ENSTCUG00005043458
 protein coding gene Chr16:19924015-19947186 (-)
CBA/J ENSMUSG00210038435
 protein coding gene Chr16:19602609-19626331 (-)
DBA/2J ENSMUSG00185028511
 protein coding gene Chr16:19541360-19565084 (-)
FVB/NJ ENSMUSG00205022651
 protein coding gene Chr16:19537289-19561015 (-)
JF1/MsJ ENSUMUG00000044586
 protein coding gene Chr16:19773039-19793779 (-)
LP/J ENSMUSG00230032640
 protein coding gene Chr16:22120436-22144162 (-)
NOD/ShiLtJ ENSMUSG00190031396
 protein coding gene Chr16:19682816-19706542 (-)
NZO/HlLtJ ENSMUSG00225036117
 protein coding gene Chr16:25371538-25395264 (-)
PWK/PhJ ENSLUMG00010041207
 protein coding gene Chr16:19596297-19616973 (-)
SPRET/EiJ ENSMSPG00010035476
 protein coding gene Chr16:19470051-19509122 (-)
WSB/EiJ ENSIUOG00005038432
 protein coding gene Chr16:19777695-19810249 (-)



Homology
more
  • Human Ortholog
    TBCCD1, TBCC domain containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TBCCD1, TBCC domain containing 1
  • Links
    NCBI Gene ID: 55171
    UniProt: Q9NVR7

  • Chr Location
    3q27.3; chr3:186546067-186570543 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    13 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    20
  • GO References
    5
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    653
  • Tissues
    15
  • cDNA Data
    65
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000004462 Ensembl Gene Model | MGI Sequence Detail 44456 C57BL/6J ±  kb
    transcript ENSMUST00000232075 Ensembl | MGI Sequence Detail 2645 Not Applicable  
    polypeptide ENSMUSP00000156210 Ensembl | MGI Sequence Detail 552 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 69
      cDNA 67
      Primer pair 2

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:2146535, MGI:2146688
    References
    more
    • Summaries
      All 43
      Developmental Gene Expression 2
      Gene Ontology 5
      Phenotypes 13
    • Earliest
      J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/08/2026
    MGI 6.24     		The Jackson Laboratory