Atad3aos Gene Detail

Summary

• Symbol
  Atad3aos
• Name
  ATPase family, AAA domain containing 3A, opposite strand
• Synonyms
  2610204G22Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1917698
  NCBI Gene: 70448
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr4:155845649-155848017 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 87.28 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  183 from dbSNP Build 142
• Strain Annotations
  28

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917698	antisense lncRNA gene	Chr4:155845522-155853723 (+)
129S1/SvImJ	ENSMUSG00200018501	protein coding gene	Chr4:146900091-146903092 (+)
129S1/SvImJ	ENSMUSG00200019724	lncRNA gene	Chr4:146900373-146908511 (+)
A/J	ENSMUSG00195020287	lncRNA gene	Chr4:148566474-148574614 (+)
A/J	ENSMUSG00195018431	protein coding gene	Chr4:148566192-148569192 (+)
AKR/J	ENSMUSG00220027236	lncRNA gene	Chr4:148141864-148150012 (+)
AKR/J	ENSMUSG00220023899	protein coding gene	Chr4:148141582-148144581 (+)
BALB/cJ	ENSMUSG00180002765	lncRNA gene	Chr4:146221059-146229188 (+)
BALB/cJ	ENSMUSG00180002392	protein coding gene	Chr4:146220777-146223776 (+)
C3H/HeJ	ENSMUSG00175014947	protein coding gene	Chr4:149521380-149524379 (+)
C3H/HeJ	ENSMUSG00175019985	lncRNA gene	Chr4:149521662-149529799 (+)
C57BL/6NJ	ENSMUSG00215027420	lncRNA gene	Chr4:148368374-148376506 (+)
C57BL/6NJ	ENSMUSG00215010659	protein coding gene	Chr4:148368092-148371413 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003619	antisense lncRNA gene	Chr4:145666190-145673207 (+)
CAST/EiJ	ENSTCUG00005036586	lncRNA gene	Chr4:152227236-152233737 (+)
CBA/J	ENSMUSG00210006191	lncRNA gene	Chr4:148180019-148188164 (+)
CBA/J	ENSMUSG00210004390	protein coding gene	Chr4:148179737-148182736 (+)
DBA/2J	ENSMUSG00185016704	lncRNA gene	Chr4:151737570-151745706 (+)
DBA/2J	ENSMUSG00185015149	protein coding gene	Chr4:151737288-151740287 (+)
FVB/NJ	ENSMUSG00205022190	lncRNA gene	Chr4:146634730-146650021 (+)
JF1/MsJ	ENSUMUG00000000425	lncRNA gene	Chr4:154769936-154778091 (+)
LP/J	ENSMUSG00230026464	lncRNA gene	Chr4:158463235-158478502 (+)
NOD/ShiLtJ	ENSMUSG00190004163	lncRNA gene	Chr4:147838529-147853816 (+)
NZO/HlLtJ	ENSMUSG00225023393	protein coding gene	Chr4:162459908-162462907 (+)
NZO/HlLtJ	ENSMUSG00225024679	lncRNA gene	Chr4:162460190-162468322 (+)
PWK/PhJ	ENSLUMG00010028331	lncRNA gene	Chr4:147022291-147030624 (+)
SPRET/EiJ	ENSMSPG00010025748	lncRNA gene	Chr4:148967509-148973988 (+)
WSB/EiJ	ENSIUOG00005006807	lncRNA gene	Chr4:146054029-146062144 (+)

Homology

• Gene Tree
  Atad3aos
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  8
• Gene trapped
  8
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  51
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000054514 (Evidence)
• NCBI Gene
  70448

Representative Sequences			Length	Strain/Species
genomic	70448	NCBI Gene Model | MGI Sequence Detail	2369	C57BL/6J
transcript	NR_027971	RefSeq | MGI Sequence Detail	971	C57BL/6
polypeptide	Q8C5I8	UniProt | EBI | MGI Sequence Detail	115	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 2

References

• Summaries
  All 17

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Atad3aos:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40713	Chr4:155845605-155845623 (+)	-35 bp
Tssr40714	Chr4:155845659-155845692 (+)	27 bp
Tssr40715	Chr4:155845792-155845796 (+)	145 bp