1700026D11Rik Gene Detail

Summary

• Symbol
  1700026D11Rik
• Name
  RIKEN cDNA 1700026D11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1917621
  NCBI Gene: 70371
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:132332648-132365977 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 64.48 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1291 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917621	lncRNA gene	Chr2:132332554-132366336 (+)
129S1/SvImJ	ENSMUSG00200049623	lncRNA gene	Chr2:129376080-129409516 (+)
A/J	ENSMUSG00195032738	lncRNA gene	Chr2:129410011-129443442 (+)
AKR/J	ENSMUSG00220045421	lncRNA gene	Chr2:129171878-129205219 (+)
BALB/cJ	ENSMUSG00180050016	lncRNA gene	Chr2:129228525-129261960 (+)
C3H/HeJ	ENSMUSG00175048983	lncRNA gene	Chr2:129762201-129795565 (+)
C57BL/6NJ	ENSMUSG00215038268	lncRNA gene	Chr2:129257946-129291382 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003261	antisense lncRNA gene	Chr2:125266460-125290408 (+)
CAST/EiJ	ENSTCUG00005040306	lncRNA gene	Chr2:128534551-128571140 (+)
CBA/J	ENSMUSG00210038499	lncRNA gene	Chr2:129618673-129652036 (+)
DBA/2J	ENSMUSG00185037387	lncRNA gene	Chr2:129269832-129303250 (+)
FVB/NJ	ENSMUSG00205043482	lncRNA gene	Chr2:128437161-128470551 (+)
JF1/MsJ	ENSUMUG00000028139	lncRNA gene	Chr2:129073443-129106576 (+)
LP/J	ENSMUSG00230039956	lncRNA gene	Chr2:131011128-131044570 (+)
NOD/ShiLtJ	ENSMUSG00190015358	lncRNA gene	Chr2:129351028-129384465 (+)
NZO/HlLtJ	ENSMUSG00225027938	lncRNA gene	Chr2:138922113-138955473 (+)
PWK/PhJ	ENSLUMG00010043996	lncRNA gene	Chr2:129072547-129113079 (+)
SPRET/EiJ	ENSMSPG00010033520	lncRNA gene	Chr2:131450249-131482461 (+)
WSB/EiJ	ENSIUOG00005044606	lncRNA gene	Chr2:129191905-129225342 (+)

Homology

• Gene Tree
  1700026D11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 1700026D11Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  78
• RefSeq
  1

• Ensembl
  ENSMUSG00000086379 (Evidence)
• NCBI Gene
  70371

Representative Sequences			Length	Strain/Species
genomic	70371	NCBI Gene Model | MGI Sequence Detail	33330	C57BL/6J
transcript	NR_028286	RefSeq | MGI Sequence Detail	847	C57BL/6

Molecular
Reagents

• All nucleic 7

  cDNA 7

References

• Summaries
  All 12

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 1700026D11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr20308	Chr2:132332617-132332627 (+)	-26 bp
Tssr20309	Chr2:132332631-132332656 (+)	-4 bp