2600006K01Rik Gene Detail

Summary

• Symbol
  2600006K01Rik
• Name
  RIKEN cDNA 2600006K01 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1917569
  NCBI Gene: 70319
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:29758258-29760329 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 20.76 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  113 from dbSNP Build 142
• Strain Annotations
  30

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917569	lncRNA gene	Chr2:29758258-29760449 (-)
129S1/SvImJ	ENSMUSG00200053130	lncRNA gene	Chr2:26728598-26730196 (-)
129S1/SvImJ	ENSMUSG00200049539	protein coding gene	Chr2:26728594-26731015 (-)
A/J	ENSMUSG00195038106	protein coding gene	Chr2:26822532-26824949 (-)
A/J	ENSMUSG00195049667	lncRNA gene	Chr2:26822536-26824130 (-)
AKR/J	ENSMUSG00220049465	protein coding gene	Chr2:26941073-26943490 (-)
AKR/J	ENSMUSG00220053657	lncRNA gene	Chr2:26941077-26942671 (-)
BALB/cJ	ENSMUSG00180052001	protein coding gene	Chr2:26841845-26844262 (-)
BALB/cJ	ENSMUSG00180054434	lncRNA gene	Chr2:26841849-26843443 (-)
C3H/HeJ	ENSMUSG00175053922	lncRNA gene	Chr2:26811159-26812753 (-)
C3H/HeJ	ENSMUSG00175052131	protein coding gene	Chr2:26811155-26813572 (-)
C57BL/6NJ	ENSMUSG00215049109	lncRNA gene	Chr2:26876794-26878388 (-)
C57BL/6NJ	ENSMUSG00215048826	protein coding gene	Chr2:26876790-26879207 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003151	antisense lncRNA gene	Chr2:25730855-25732478 (-)
CAST/EiJ	ENSTCUG00005053512	lncRNA gene	Chr2:26547215-26548821 (-)
CBA/J	ENSMUSG00210018075	lncRNA gene	Chr2:26844326-26845920 (-)
CBA/J	ENSMUSG00210016723	protein coding gene	Chr2:26844322-26846739 (-)
DBA/2J	ENSMUSG00185047211	protein coding gene	Chr2:26736608-26739025 (-)
DBA/2J	ENSMUSG00185053351	lncRNA gene	Chr2:26736612-26738206 (-)
FVB/NJ	ENSMUSG00205051271	lncRNA gene	Chr2:26588664-26590258 (-)
FVB/NJ	ENSMUSG00205046290	protein coding gene	Chr2:26588660-26591077 (-)
JF1/MsJ	ENSUMUG00000056423	lncRNA gene	Chr2:26632537-26634133 (-)
LP/J	ENSMUSG00230045607	lncRNA gene	Chr2:28664358-28665956 (-)
LP/J	ENSMUSG00230038552	protein coding gene	Chr2:28664354-28666775 (-)
NOD/ShiLtJ	ENSMUSG00190042589	protein coding gene	Chr2:26843445-26845862 (-)
NOD/ShiLtJ	ENSMUSG00190053344	lncRNA gene	Chr2:26843449-26845043 (-)
NZO/HlLtJ	ENSMUSG00225011116	lncRNA gene	Chr2:36413648-36415250 (-)
PWK/PhJ	ENSLUMG00010053003	lncRNA gene	Chr2:26709525-26711087 (-)
SPRET/EiJ	ENSMSPG00010046878	lncRNA gene	Chr2:27432119-27433717 (-)
WSB/EiJ	ENSIUOG00005052778	lncRNA gene	Chr2:26694497-26696083 (-)

Homology

• Gene Tree
  2600006K01Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000039798 (Evidence)
• NCBI Gene
  70319

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000039798	Ensembl Gene Model | MGI Sequence Detail	2072	C57BL/6J
transcript	ENSMUST00000279946	Ensembl | MGI Sequence Detail	1796	Not Applicable
polypeptide	Q9D0Q5	UniProt | EBI | MGI Sequence Detail	116	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 11
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 2600006K01Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr23340	Chr2:29760200-29760235 (-)	111 bp