2310040G07Rik Gene Detail

Summary

• Symbol
  2310040G07Rik
• Name
  RIKEN cDNA 2310040G07 gene
• Synonyms
  Gm16528

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1917534
  NCBI Gene: 70284
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:77076219-77095456 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 41.45 cM, cytoband E1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  467 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917534	lncRNA gene	Chr5:77076219-77095456 (+)
129S1/SvImJ	ENSMUSG00200001270	pseudogene	Chr5:72766597-72785988 (+)
A/J	ENSMUSG00195010740	pseudogene	Chr5:72082222-72092593 (+)
AKR/J	ENSMUSG00220014889	pseudogene	Chr5:72193997-72204374 (+)
BALB/cJ	ENSMUSG00180000104	pseudogene	Chr5:71838392-71857786 (+)
C3H/HeJ	ENSMUSG00175004260	pseudogene	Chr5:73883294-73893667 (+)
C57BL/6NJ	ENSMUSG00215000526	pseudogene	Chr5:72652960-72672351 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003696	antisense lncRNA gene	Chr5:69831813-69842137 (+)
CAST/EiJ	ENSTCUG00005013749	pseudogene	Chr5:71634630-71645019 (+)
CBA/J	ENSMUSG00210000520	pseudogene	Chr5:72821238-72831613 (+)
DBA/2J	ENSMUSG00185017070	pseudogene	Chr5:74651185-74661556 (+)
FVB/NJ	ENSMUSG00205030472	pseudogene	Chr5:71609494-71619871 (+)
JF1/MsJ	ENSUMUG00000006874	pseudogene	Chr5:79142801-79153128 (+)
LP/J	ENSMUSG00230022890	pseudogene	Chr5:79340554-79359944 (+)
NOD/ShiLtJ	ENSMUSG00190007713	pseudogene	Chr5:71772555-71782961 (+)
NZO/HlLtJ	ENSMUSG00225034697	pseudogene	Chr5:84387547-84406937 (+)
PWK/PhJ	ENSLUMG00010007538	pseudogene	Chr5:71716225-71726523 (+)
SPRET/EiJ	ENSMSPG00010009972	pseudogene	Chr5:73715068-73723673 (+)
WSB/EiJ	ENSIUOG00005018743	pseudogene	Chr5:74618219-74628591 (+)

Homology

• Gene Tree
  2310040G07Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving 2310040G07Rik
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• UniProt
  1

• Ensembl
  ENSMUSG00000072852 (Evidence)
• NCBI Gene
  70284

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000072852	Ensembl Gene Model | MGI Sequence Detail	19238	C57BL/6J
transcript	ENSMUST00000101090	Ensembl | MGI Sequence Detail	549	Not Applicable
polypeptide	Q9D719	UniProt | EBI | MGI Sequence Detail	145	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR044822 Myb/SANT-like DNA-binding domain 4

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:4361136

References

• Summaries
  All 17

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573