2310040G07Rik Gene Detail

Summary

• Symbol
  2310040G07Rik
• Name
  RIKEN cDNA 2310040G07 gene
• Synonyms
  Gm16528

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1917534
  NCBI Gene: 70284
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:77076219-77095456 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 41.45 cM, cytoband E1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917534	lncRNA gene	Chr5:77076219-77095456 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004104	antisense lncRNA gene	Chr5:77145907-77161475 (+)
A/J	MGP_AJ_G0004085	antisense lncRNA gene	Chr5:74200822-74211200 (+)
AKR/J	MGP_AKRJ_G0004063	antisense lncRNA gene	Chr5:76622356-76632711 (+)
BALB/cJ	MGP_BALBcJ_G0004071	antisense lncRNA gene	Chr5:74931965-74945324 (+)
C3H/HeJ	MGP_C3HHeJ_G0004017	antisense lncRNA gene	Chr5:76996226-77006616 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004219	antisense lncRNA gene	Chr5:80224063-80244784 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003696	antisense lncRNA gene	Chr5:69831813-69842137 (+)
CAST/EiJ	MGP_CASTEiJ_G0003980	antisense lncRNA gene	Chr5:76196534-76206897 (+)
CBA/J	MGP_CBAJ_G0004011	antisense lncRNA gene	Chr5:82875576-82885963 (+)
DBA/2J	MGP_DBA2J_G0004026	antisense lncRNA gene	Chr5:74257802-74268441 (+)
FVB/NJ	MGP_FVBNJ_G0004045	antisense lncRNA gene	Chr5:73456801-73469321 (+)
LP/J	MGP_LPJ_G0004106	antisense lncRNA gene	Chr5:77583529-77598845 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004034	antisense lncRNA gene	Chr5:86015608-86026389 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004215	antisense lncRNA gene	Chr5:76168124-76178737 (+)
PWK/PhJ	MGP_PWKPhJ_G0003933	antisense lncRNA gene	Chr5:73276992-73287379 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003878	antisense lncRNA gene	Chr5:75527412-75536009 (+)
WSB/EiJ	MGP_WSBEiJ_G0004015	antisense lncRNA gene	Chr5:76499324-76509700 (+)

Homology

• Gene Tree
  2310040G07Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving 2310040G07Rik
• Find Mice (IMSR)
  4 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000072852 (Evidence)
• NCBI Gene
  70284

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000072852	Ensembl Gene Model | MGI Sequence Detail	19238	C57BL/6J
transcript	ENSMUST00000101090	Ensembl | MGI Sequence Detail	549	Not Applicable
polypeptide	Q9D719	UniProt | EBI | MGI Sequence Detail	145	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR044822 Myb/SANT-like DNA-binding domain 4

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:4361136

References

• Summaries
  All 17

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 2310040G07Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46750	Chr5:77076191-77076223 (+)	-12 bp