Hk1os Gene Detail

Summary

• Symbol
  Hk1os
• Name
  hexokinase 1, opposite strand
• Synonyms
  2210417K05Rik, Gm40675

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1917412
  NCBI Gene: 70162
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr10:62176013-62199390 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  653 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917412	antisense lncRNA gene	Chr10:62175980-62200272 (+)
129S1/SvImJ	ENSMUSG00200029553	lncRNA gene	Chr10:58848613-58872912 (+)
A/J	ENSMUSG00195028245	lncRNA gene	Chr10:59155963-59180261 (+)
AKR/J	ENSMUSG00220043033	lncRNA gene	Chr10:58849290-58873587 (+)
BALB/cJ	ENSMUSG00180028913	lncRNA gene	Chr10:59198245-59222545 (+)
C3H/HeJ	ENSMUSG00175026158	lncRNA gene	Chr10:59055845-59080136 (+)
C57BL/6NJ	ENSMUSG00215030576	lncRNA gene	Chr10:58796380-58820673 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002508	antisense lncRNA gene	Chr10:56849023-56872756 (+)
CAST/EiJ	ENSTCUG00005029555	lncRNA gene	Chr10:58851491-58875817 (+)
CBA/J	ENSMUSG00210038338	lncRNA gene	Chr10:58934156-58958449 (+)
DBA/2J	ENSMUSG00185043715	lncRNA gene	Chr10:59275719-59300017 (+)
FVB/NJ	ENSMUSG00205036768	lncRNA gene	Chr10:58949298-58973597 (+)
JF1/MsJ	ENSUMUG00000023394	lncRNA gene	Chr10:60515626-60540319 (+)
LP/J	ENSMUSG00230019396	lncRNA gene	Chr10:61078695-61102987 (+)
NOD/ShiLtJ	ENSMUSG00190040946	lncRNA gene	Chr10:59261338-59285630 (+)
NZO/HlLtJ	ENSMUSG00225045501	lncRNA gene	Chr10:65359680-65383972 (+)
PWK/PhJ	ENSLUMG00010024316	lncRNA gene	Chr10:58892093-58922715 (+)
SPRET/EiJ	ENSMSPG00010027095	lncRNA gene	Chr10:60470277-60494207 (+)
WSB/EiJ	ENSIUOG00005041667	lncRNA gene	Chr10:58830659-58855016 (+)

Homology

• Gene Tree
  Hk1os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  7
• Chemically induced (other)
  1
• Gene trapped
  5
• Radiation induced
  1
• Genomic Mutations
  2 involving Hk1os
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  5

• Ensembl
  ENSMUSG00000085347 (Evidence)
• NCBI Gene
  70162

Representative Sequences			Length	Strain/Species
genomic	70162	NCBI Gene Model | MGI Sequence Detail	23378	C57BL/6J
transcript	NR_168626	RefSeq | MGI Sequence Detail	1000	ZRU/MplStud

Molecular
Reagents

• All nucleic 4

  cDNA 4

Other
Accession IDs

MGI:5623560

References

• Summaries
  All 18

  Phenotypes 8
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Hk1os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93705	Chr10:62174674-62174700 (+)	-1,326 bp
Tssr93706	Chr10:62176007-62176021 (+)	1 bp
Tssr93707	Chr10:62176398-62176463 (+)	418 bp
Tssr93708	Chr10:62198108-62198132 (+)	22,107 bp