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1700027F09Rik Gene Detail
Summary
  • Symbol
    1700027F09Rik
  • Name
    RIKEN cDNA 1700027F09 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1917249
    NCBI Gene: 69999
  • Alliance
    genome feature page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:64612156-64625285 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    448 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917249
 lncRNA gene Chr5:64612029-64630076 (-)
129S1/SvImJ ENSMUSG00200000210
 lncRNA gene Chr5:60225529-60238660 (-)
A/J ENSMUSG00195000388
 lncRNA gene Chr5:59588843-59602407 (-)
AKR/J ENSMUSG00220007245
 lncRNA gene Chr5:59725957-59739515 (-)
BALB/cJ ENSMUSG00180006374
 lncRNA gene Chr5:59375358-59388513 (-)
C3H/HeJ ENSMUSG00175029913
 lncRNA gene Chr5:61403637-61416876 (-)
C57BL/6NJ ENSMUSG00215002849
 lncRNA gene Chr5:60157038-60170172 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0006048
 lincRNA gene Chr5:57768446-57782822 (-)
CAST/EiJ ENSTCUG00005000669
 lncRNA gene Chr5:59327649-59341479 (-)
CBA/J ENSMUSG00210000185
 lncRNA gene Chr5:60316586-60329833 (-)
DBA/2J ENSMUSG00185005926
 lncRNA gene Chr5:62174059-62187298 (-)
FVB/NJ ENSMUSG00205011063
 lncRNA gene Chr5:59126127-59139677 (-)
JF1/MsJ ENSUMUG00000021569
 lncRNA gene Chr5:66661210-66674558 (-)
LP/J ENSMUSG00230009116
 lncRNA gene Chr5:66841032-66854162 (-)
NOD/ShiLtJ ENSMUSG00190000627
 lncRNA gene Chr5:59312416-59325974 (-)
NZO/HlLtJ ENSMUSG00225010602
 lncRNA gene Chr5:71973204-71986366 (-)
PWK/PhJ ENSLUMG00010004371
 lncRNA gene Chr5:59277452-59290563 (-)
SPRET/EiJ ENSMSPG00010034201
 lncRNA gene Chr5:61081892-61095325 (-)
WSB/EiJ ENSIUOG00005019106
 lncRNA gene Chr5:62280034-62293169 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    17 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    2
  • Radiation induced
    1
  • Spontaneous
    1
  • Genomic Mutations
    4 involving 1700027F09Rik
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    3
Sequences &
Gene Models
less
  • All Sequences
    56
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 69999 NCBI Gene Model | MGI Sequence Detail 13130 C57BL/6J ±  kb
transcript NR_040681 RefSeq | MGI Sequence Detail 766 ZRU/MplStud  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3
References
more
  • Summaries
    All 26
    Phenotypes 17
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory