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Tunar Gene Detail
Summary
  • Symbol
    Tunar
  • Name
    Tcl1 upstream neural differentiation associated RNA
  • Synonyms
    2810011L19Rik, Mi-Lnc78, TUNA
Location &
Maps
more
  • Sequence Map
    Chr12:105303087-105350191 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 55.45 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1322 from dbSNP Build 142
  • Strain Annotations
    14
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917202
 lncRNA gene Chr12:105300129-105350191 (+)
129S1/SvImJ ENSMUSG00200022933
 protein coding gene Chr12:97069650-97116989 (+)
A/J ENSMUSG00195018209
 protein coding gene Chr12:99631639-99678990 (+)
AKR/J ENSMUSG00220036632
 protein coding gene Chr12:97509088-97556433 (+)
BALB/cJ ENSMUSG00180033494
 protein coding gene Chr12:98815213-98862589 (+)
C3H/HeJ ENSMUSG00175032978
 protein coding gene Chr12:101443754-101491099 (+)
C57BL/6NJ ENSMUSG00215040651
 protein coding gene Chr12:98105533-98152879 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0004897
 lincRNA gene Chr12:99802260-99849849 (+)
CAST/EiJ no annotation
CBA/J ENSMUSG00210014645
 protein coding gene Chr12:98511057-98558402 (+)
DBA/2J ENSMUSG00185043694
 protein coding gene Chr12:100276919-100324260 (+)
FVB/NJ ENSMUSG00205015847
 protein coding gene Chr12:97500869-97548228 (+)
JF1/MsJ no annotation
LP/J ENSMUSG00230029224
 protein coding gene Chr12:107334947-107382287 (+)
NOD/ShiLtJ ENSMUSG00190020039
 protein coding gene Chr12:87656961-87704300 (-)
NZO/HlLtJ ENSMUSG00225036979
 protein coding gene Chr12:109070365-109117725 (+)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    TUNAR, transmembrane neural differentiation associated intracellular calcium regulator
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TUNAR, transmembrane neural differentiation associated intracellular calcium regulator
  • Synonyms
    BNLN, HI-LNC78, LINC00617, pTUNAR, TUNA
  • Links
    NCBI Gene ID: 100507043
    UniProt: A0A1B0GTB2

  • Chr Location
    chr14:95866587-95925871 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    21
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    669
  • Tissues
    37
  • cDNA Data
    7
  • Literature Summary
    3
Sequences &
Gene Models
less
  • All Sequences
    34
  • RefSeq
    5
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 69952 NCBI Gene Model | MGI Sequence Detail 47105 C57BL/6J ±  kb
transcript NM_001416144 RefSeq | MGI Sequence Detail 3048 C57BL/6  
polypeptide A0A1B0GQX2 UniProt | EBI | MGI Sequence Detail 48 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR054138 TUNAR
Molecular
Reagents
less
  • All nucleic 12
    cDNA 7
    Primer pair 4
    Other 1
    Antibodies 1

    Microarray probesets 1
References
more
  • Summaries
    All 22
    Developmental Gene Expression 3
    Gene Ontology 5
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:337000 Simmers MD, et al., LncRNA Tuna is activated in cadmium-induced placental insufficiency and drives the NRF2-mediated oxidative stress response. Front Cell Dev Biol. 2023;11:1151108
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory