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Tunar Gene Detail
Summary
  • Symbol
    Tunar
  • Name
    Tcl1 upstream neural differentiation associated RNA
  • Synonyms
    2810011L19Rik, TUNA
Location &
Maps
more
  • Sequence Map
    Chr12:105303087-105350191 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 55.45 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    221 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917202
 lncRNA gene Chr12:105300129-105350191 (+)
129S1/SvImJ MGP_129S1SvImJ_G0005393
 lincRNA gene Chr12:107196920-107245710 (+)
A/J MGP_AJ_G0005376
 lincRNA gene Chr12:103192729-103240623 (+)
AKR/J MGP_AKRJ_G0005356
 lincRNA gene Chr12:106175414-106224810 (+)
BALB/cJ MGP_BALBcJ_G0005358
 lincRNA gene Chr12:103611547-103659200 (+)
C3H/HeJ MGP_C3HHeJ_G0005307
 lincRNA gene Chr12:106615201-106662600 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005512
 lincRNA gene Chr12:110528407-110577489 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0004897
 lincRNA gene Chr12:99802260-99849849 (+)
CAST/EiJ MGP_CASTEiJ_G0005251
 lincRNA gene Chr12:101408854-101457053 (+)
CBA/J MGP_CBAJ_G0005296
 lincRNA gene Chr12:114871053-114931126 (+)
DBA/2J MGP_DBA2J_G0005313
 lincRNA gene Chr12:102723906-102775165 (+)
FVB/NJ MGP_FVBNJ_G0005339
 lincRNA gene Chr12:101490637-101540335 (+)
LP/J MGP_LPJ_G0005395
 lincRNA gene Chr12:107091053-107139302 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0005321
 lincRNA gene Chr12:118277654-118327388 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005513
 lincRNA gene Chr12:105566667-105615109 (+)
PWK/PhJ MGP_PWKPhJ_G0005200
 lincRNA gene Chr12:97302533-97351001 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005121
 lincRNA gene Chr12:99817931-99865796 (+)
WSB/EiJ MGP_WSBEiJ_G0005301
 lincRNA gene Chr12:106531640-106585785 (+)



Homology
more
  • Human Ortholog
    TUNAR, TCL1 upstream neural differentiation-associated RNA
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TUNAR, TCL1 upstream neural differentiation-associated RNA
  • Synonyms
    BNLN, HI-LNC78, LINC00617, pTUNAR, TUNA
  • Links
    NCBI Gene ID: 100507043
    UniProt: A0A1B0GTB2

  • Chr Location
    chr14:95866587-95925663 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    20
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    778
  • Tissues
    37
  • cDNA Data
    7
  • Literature Summary
    3
Sequences &
Gene Models
less
  • All Sequences
    35
  • RefSeq
    5
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 69952 NCBI Gene Model | MGI Sequence Detail 47105 C57BL/6J ±  kb
transcript NM_001416144 RefSeq | MGI Sequence Detail 3048 C57BL/6  
polypeptide A0A1B0GQX2 UniProt | EBI | MGI Sequence Detail 48 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 12
    cDNA 7
    Primer pair 4
    Other 1

    Microarray probesets 1
References
more
  • Summaries
    All 20
    Developmental Gene Expression 3
    Gene Ontology 5
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:337000 Simmers MD, et al., LncRNA Tuna is activated in cadmium-induced placental insufficiency and drives the NRF2-mediated oxidative stress response. Front Cell Dev Biol. 2023;11:1151108
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory