2610020C07Rik Gene Detail

Summary

• Symbol
  2610020C07Rik
• Name
  RIKEN cDNA 2610020C07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1917168
  NCBI Gene: 69918
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:11021247-11043660 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 6.38 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  530 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917168	lncRNA gene	Chr16:11020710-11082342 (+)
129S1/SvImJ	ENSMUSG00200012444	lncRNA gene	Chr16:8026787-8069672 (+)
A/J	ENSMUSG00195011717	lncRNA gene	Chr16:7564864-7607751 (+)
AKR/J	ENSMUSG00220017465	lncRNA gene	Chr16:7853676-7896553 (+)
BALB/cJ	ENSMUSG00180008938	lncRNA gene	Chr16:7804071-7846956 (+)
C3H/HeJ	ENSMUSG00175031551	lncRNA gene	Chr16:7994952-8037832 (+)
C57BL/6NJ	ENSMUSG00215021879	lncRNA gene	Chr16:7670738-7713616 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005127	lincRNA gene	Chr16:7787492-7804734 (+)
CAST/EiJ	ENSTCUG00005032414	lncRNA gene	Chr16:7927044-7970383 (+)
CBA/J	ENSMUSG00210012162	lncRNA gene	Chr16:8012116-8054997 (+)
DBA/2J	ENSMUSG00185010364	lncRNA gene	Chr16:7957450-8000320 (+)
FVB/NJ	ENSMUSG00205014051	lncRNA gene	Chr16:7874099-7916987 (+)
JF1/MsJ	ENSUMUG00000038064	lncRNA gene	Chr16:8081300-8124582 (+)
LP/J	ENSMUSG00230046504	lncRNA gene	Chr16:10522545-10565419 (+)
NOD/ShiLtJ	ENSMUSG00190027581	lncRNA gene	Chr16:8056258-8099131 (+)
NZO/HlLtJ	ENSMUSG00225032370	lncRNA gene	Chr16:13740553-13783432 (+)
PWK/PhJ	ENSLUMG00010017859	lncRNA gene	Chr16:7933526-7976745 (+)
SPRET/EiJ	ENSMSPG00010018211	lncRNA gene	Chr16:7899332-7940586 (+)
WSB/EiJ	ENSIUOG00005016607	lncRNA gene	Chr16:8021476-8064334 (+)

Homology

• Gene Tree
  2610020C07Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  599
• Tissues
  1
• cDNA Data
  13
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  62
• RefSeq
  1

• Ensembl
  ENSMUSG00000097537 (Evidence)
• NCBI Gene
  69918

Representative Sequences			Length	Strain/Species
genomic	69918	NCBI Gene Model | MGI Sequence Detail	22414	C57BL/6J
transcript	NR_038156	RefSeq | MGI Sequence Detail	2156	C57BL/6

Molecular
Reagents

• All nucleic 14

  cDNA 13

  Primer pair 1

  
  

  Microarray probesets 3

References

• Summaries
  All 16

  Developmental Gene Expression 1

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:313620 Nabeshima R, et al., Loss of Fam60a, a Sin3a subunit, results in embryonic lethality and is associated with aberrant methylation at a subset of gene promoters. Elife. 2018 Aug 2;7:e36435

TSS for 2610020C07Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137080	Chr16:11021239-11021312 (+)	29 bp