2010320O07Rik Gene Detail

Summary

• Symbol
  2010320O07Rik
• Name
  RIKEN cDNA 2010320O07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1917131
  NCBI Gene: 69881
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:38345165-38362216 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 20.11 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  388 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917131	lncRNA gene	Chr18:38342825-38364310 (+)
129S1/SvImJ	ENSMUSG00200044877	lncRNA gene	Chr18:35340492-35359868 (+)
A/J	ENSMUSG00195037152	lncRNA gene	Chr18:35493082-35512465 (+)
AKR/J	ENSMUSG00220017257	lncRNA gene	Chr18:35461138-35480511 (+)
BALB/cJ	ENSMUSG00180021670	lncRNA gene	Chr18:35942708-35962090 (+)
C3H/HeJ	ENSMUSG00175038889	lncRNA gene	Chr18:35455647-35475021 (+)
C57BL/6NJ	ENSMUSG00215033846	lncRNA gene	Chr18:35212446-35231850 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013496	unclassified non-coding RNA gene	Chr18:35401048-35420663 (+)
CAST/EiJ	ENSTCUG00005024948	lncRNA gene	Chr18:35072194-35091527 (+)
CBA/J	ENSMUSG00210021875	lncRNA gene	Chr18:35484734-35504115 (+)
DBA/2J	ENSMUSG00185020703	lncRNA gene	Chr18:35419331-35438706 (+)
FVB/NJ	ENSMUSG00205033592	lncRNA gene	Chr18:35119416-35138795 (+)
JF1/MsJ	ENSUMUG00000050203	lncRNA gene	Chr18:35550313-35569823 (+)
LP/J	ENSMUSG00230048669	lncRNA gene	Chr18:37534620-37553990 (+)
NOD/ShiLtJ	ENSMUSG00190022061	lncRNA gene	Chr18:35203993-35223346 (+)
NZO/HlLtJ	ENSMUSG00225047384	lncRNA gene	Chr18:37441503-37460872 (+)
PWK/PhJ	ENSLUMG00010013037	lncRNA gene	Chr18:35696816-35716678 (+)
SPRET/EiJ	ENSMSPG00010022119	lncRNA gene	Chr18:35731321-35750707 (+)
WSB/EiJ	ENSIUOG00005008450	lncRNA gene	Chr18:35198982-35218341 (+)

Homology

• Gene Tree
  2010320O07Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  11
• Gene trapped
  11
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  2

• Ensembl
  ENSMUSG00000089983 (Evidence)
• NCBI Gene
  69881

Representative Sequences			Length	Strain/Species
genomic	69881	NCBI Gene Model | MGI Sequence Detail	17052	C57BL/6J
transcript	AK008598	GenBank | ENA | DDBJ | MGI Sequence Detail	526	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for 2010320O07Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150777	Chr18:38361601-38361614 (+)	16,443 bp