1810064F22Rik Gene Detail

Summary

• Symbol
  1810064F22Rik
• Name
  RIKEN cDNA 1810064F22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1917112
  NCBI Gene: 69862
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:22118082-22125156 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 8.60 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  418 from dbSNP Build 142
• Strain Annotations
  21

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917112	lncRNA gene	Chr9:22100395-22125251 (-)
129S1/SvImJ	ENSMUSG00200050267	lncRNA gene	Chr9:19063307-19080204 (-)
A/J	ENSMUSG00195041473	lncRNA gene	Chr9:18899985-18916882 (-)
AKR/J	ENSMUSG00220034080	lncRNA gene	Chr9:18902394-18919291 (-)
BALB/cJ	ENSMUSG00180043205	lncRNA gene	Chr9:19034259-19051156 (-)
C3H/HeJ	ENSMUSG00175044089	lncRNA gene	Chr9:18996774-19013671 (-)
C57BL/6NJ	ENSMUSG00215038660	lncRNA gene	Chr9:18994074-19010975 (-)
C57BL/6NJ	ENSMUSG00215031517	protein coding gene	Chr9:19001294-19011061 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004174	antisense lncRNA gene	Chr9:18231252-18233416 (-)
CAST/EiJ	ENSTCUG00005035945	lncRNA gene	Chr9:19030972-19063574 (-)
CBA/J	ENSMUSG00210043369	protein coding gene	Chr9:18984913-18994676 (-)
CBA/J	ENSMUSG00210046662	lncRNA gene	Chr9:18977693-18994590 (-)
DBA/2J	ENSMUSG00185026884	lncRNA gene	Chr9:19093000-19109897 (-)
FVB/NJ	ENSMUSG00205044463	lncRNA gene	Chr9:19322285-19357102 (-)
JF1/MsJ	ENSUMUG00000050919	lncRNA gene	Chr9:19194786-19222662 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190043191	lncRNA gene	Chr9:19015190-19050002 (-)
NZO/HlLtJ	ENSMUSG00225050482	protein coding gene	Chr9:19442156-19451919 (-)
NZO/HlLtJ	ENSMUSG00225051435	lncRNA gene	Chr9:19434936-19451833 (-)
PWK/PhJ	ENSLUMG00010048444	lncRNA gene	Chr9:19082925-19110667 (-)
SPRET/EiJ	ENSMSPG00010024628	lncRNA gene	Chr9:19304284-19338563 (-)
WSB/EiJ	ENSIUOG00005046436	lncRNA gene	Chr9:18556235-18579693 (-)

Homology

• Gene Tree
  1810064F22Rik
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  11 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000090925 (Evidence)
• NCBI Gene
  69862

Representative Sequences			Length	Strain/Species
genomic	69862	NCBI Gene Model | MGI Sequence Detail	7075	C57BL/6J
transcript	NR_027981	RefSeq | MGI Sequence Detail	2302	C57BL/6
polypeptide	Q3UQG2	UniProt | EBI | MGI Sequence Detail	122	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR018154 TLV/ENV coat polyprotein

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 12
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 1810064F22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr88478	Chr9:22125146-22125162 (-)	2 bp