2010008C14Rik Gene Detail

Summary

• Symbol
  2010008C14Rik
• Name
  RIKEN cDNA 2010008C14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1917109
  NCBI Gene: 69859
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr6:125060400-125060992 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917109	lncRNA gene	Chr6:125060400-125060992 (+)
129S1/SvImJ	ENSMUSG00200051479	unclassified gene	Chr6:122121780-122122372 (+)
A/J	ENSMUSG00195049681	unclassified gene	Chr6:121568199-121568791 (+)
AKR/J	ENSMUSG00220033761	unclassified gene	Chr6:120429796-120430388 (+)
BALB/cJ	ENSMUSG00180049603	unclassified gene	Chr6:121906853-121907445 (+)
C3H/HeJ	ENSMUSG00175043343	unclassified gene	Chr6:121568653-121569245 (+)
C57BL/6NJ	ENSMUSG00215048326	unclassified gene	Chr6:121885527-121886119 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001798	unclassified gene	Chr6:120770232-120770787 (+)
CAST/EiJ	ENSTCUG00005050821	unclassified gene	Chr6:121751636-121752217 (+)
CBA/J	ENSMUSG00210047817	unclassified gene	Chr6:121607255-121607847 (+)
DBA/2J	ENSMUSG00185045021	unclassified gene	Chr6:122306863-122307455 (+)
FVB/NJ	ENSMUSG00205051171	unclassified gene	Chr6:121021660-121022252 (+)
JF1/MsJ	ENSUMUG00000054997	unclassified gene	Chr6:120716302-120716889 (+)
LP/J	ENSMUSG00230044133	unclassified gene	Chr6:123503740-123504332 (+)
NOD/ShiLtJ	ENSMUSG00190051286	unclassified gene	Chr6:121278441-121279033 (+)
NZO/HlLtJ	ENSMUSG00225018112	unclassified gene	Chr6:125533663-125534255 (+)
PWK/PhJ	ENSLUMG00010049308	unclassified gene	Chr6:119982798-119983385 (+)
SPRET/EiJ	ENSMSPG00010044218	unclassified gene	Chr6:122835953-122836545 (+)
WSB/EiJ	ENSIUOG00005045086	unclassified gene	Chr6:121992179-121992771 (+)

Homology

• Gene Tree
  2010008C14Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000107761 (Evidence)
• NCBI Gene
  69859

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107761	Ensembl Gene Model | MGI Sequence Detail	593	C57BL/6J
transcript	AK008157	GenBank | ENA | DDBJ | MGI Sequence Detail	593	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 2010008C14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr58902	Chr6:125060136-125060147 (+)	-258 bp
Tssr58903	Chr6:125060191-125060203 (+)	-203 bp
Tssr58904	Chr6:125060215-125060226 (+)	-179 bp
Tssr58905	Chr6:125060384-125060404 (+)	-6 bp