2010002M09Rik Gene Detail

Summary

• Symbol
  2010002M09Rik
• Name
  RIKEN cDNA 2010002M09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1917091
  NCBI Gene: 69841
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:104127919-104129405 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  72 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917091	lncRNA gene	Chr3:104127919-104129405 (+)
129S1/SvImJ	ENSMUSG00200045441	lncRNA gene	Chr3:100740742-100741995 (+)
A/J	ENSMUSG00195025442	lncRNA gene	Chr3:101154339-101155593 (+)
AKR/J	ENSMUSG00220042424	lncRNA gene	Chr3:99514361-99515614 (+)
BALB/cJ	ENSMUSG00180020151	lncRNA gene	Chr3:101082475-101083728 (+)
C3H/HeJ	ENSMUSG00175033061	lncRNA gene	Chr3:100636636-100637890 (+)
C57BL/6NJ	ENSMUSG00215033913	lncRNA gene	Chr3:101398247-101399501 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021524	lncRNA gene	Chr3:101360806-101362059 (+)
CBA/J	ENSMUSG00210009049	lncRNA gene	Chr3:101258675-101259929 (+)
DBA/2J	ENSMUSG00185022401	lncRNA gene	Chr3:101734416-101735670 (+)
FVB/NJ	ENSMUSG00205032931	lncRNA gene	Chr3:100321831-100323084 (+)
JF1/MsJ	ENSUMUG00000052733	lncRNA gene	Chr3:100485648-100486901 (+)
LP/J	ENSMUSG00230020424	lncRNA gene	Chr3:103669052-103670305 (+)
NOD/ShiLtJ	ENSMUSG00190036743	lncRNA gene	Chr3:101934456-101935709 (+)
NZO/HlLtJ	ENSMUSG00225019975	lncRNA gene	Chr3:106136200-106137453 (+)
PWK/PhJ	ENSLUMG00010029891	lncRNA gene	Chr3:100562869-100564122 (+)
SPRET/EiJ	ENSMSPG00010047279	lncRNA gene	Chr3:100747678-100748930 (+)
WSB/EiJ	ENSIUOG00005004578	lncRNA gene	Chr3:101279518-101280771 (+)

Homology

• Gene Tree
  2010002M09Rik
  

Expression

• cDNA Data
  2

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120952 (Evidence)
• NCBI Gene
  69841

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120952	Ensembl Gene Model | MGI Sequence Detail	1487	C57BL/6J
transcript	ENSMUST00000246633	Ensembl | MGI Sequence Detail	1487	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 2010002M09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31043	Chr3:104128187-104128204 (+)	277 bp